Skip to content

Commit

Permalink
release only
Browse files Browse the repository at this point in the history
  • Loading branch information
Michael Wang committed Sep 16, 2024
1 parent ca4a338 commit 70aeb2e
Show file tree
Hide file tree
Showing 36 changed files with 0 additions and 32,120 deletions.
2 changes: 0 additions & 2 deletions .gitattributes

This file was deleted.

7 changes: 0 additions & 7 deletions .gitignore

This file was deleted.

Binary file removed Figures/Fig1.png
Binary file not shown.
6 changes: 0 additions & 6 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,11 +1,5 @@
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/olivar/README.html)
[![Anaconda-Server Badge](https://anaconda.org/bioconda/olivar/badges/downloads.svg)](https://anaconda.org/bioconda/olivar)

# Olivar multiplex PCR tiling design

## Description
Olivar is a Python software for multiplex PCR tiling design. Olivar first builds an index for each target of interest, incorporating undesired sequence features such as homologous regions, SNPs and extreme GC content. Olivar then designs tiled amplicons covering a single index or multiple indexes, and minimizes primer dimers with the [SADDLE](https://doi.org/10.1038/s41467-022-29500-4) algorithm. Olivar is published as an [article](https://doi.org/10.1038/s41467-024-49957-9) on Nature Communications.
![](Figures/Fig1.png)

## Web Interface

Expand Down
94 changes: 0 additions & 94 deletions example.py

This file was deleted.

Loading

0 comments on commit 70aeb2e

Please sign in to comment.