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velocyto.R

RNA velocity estimation in R

Installation

The easiest way to install velocyto.R is using devtools::install_github() from R:

library(devtools)
install_github("velocyto-team/velocyto.R")

Tutorials

The example shows how to annotate SMART-seq2 reads from bam file and estimate RNA velocity.

The example shows how to load spliced/unspliced matrices from loom files prepared by velocyto.py CLI, use pagoda2 to cluster/embed cells, and then visualize RNA velocity on that embedding.

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  • R 86.0%
  • C++ 14.0%