Welcome to the Google Genomics GitHub Organization!
- Watch this codelab walkthrough:
- Try a few queries on public genomic data using Google BigQuery.
If you are ready to start coding, take a look at the list below. But if you are looking for a task-oriented list (e.g., "how do I analyze variants with Google Genomics"), a better place to start is the Google Genomics Cookbook.
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getting-started-bigquery Example queries to show how to get started with genomic data in BigQuery.
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codelabs Codelabs demonstrating usage of several tools and systems on genomic data.
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bigquery-examples Advanced BigQuery examples on genomic data.
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api-client-java A command line tool for Google Genomics API queries.
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api-client-r An R package for Google Genomics API queries.
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gatk-tools-java Tools for using Picard and GATK with the Google Genomics API.
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dataflow-java Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
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spark-examples Apache Spark jobs such as Principal Coordinate Analysis.
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getting-started-with-the-api Examples of how to get started with the Google Genomics API in many languages.
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api-provider-local-java An implementation of the Global Alliance Reads API which reads data from local BAM files.
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api-client-javascript A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.
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api-client-android A sample Android app that calls the Google Genomics API.
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api-client-python Google AppEngine implelmentation of a simple genome browser that pulls data from the Google Genomics API.
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api-client-r An R package for Google Genomics API queries.
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See the Shiny example.
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See the ggbio example.
- denovo-variant-caller-java A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.
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gce-images Scripts that create a Google Compute Engine image containing a set of popular genomics software.
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utils-java Common Java files for Google Genomics integrations.
- See https://cloud.google.com/genomics to understand what Google Genomics is and how to get started.
- See http://googlegenomics.readthedocs.org for an incrementally growing task-oriented cookbook.
- See the README in each GitHub repository for specifics about the code.