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VSEARCH 1.4.4: Remove unintentional debug message
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torognes committed Oct 3, 2015
1 parent dbc9874 commit 09bf068
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18 changes: 9 additions & 9 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -36,9 +36,9 @@ In the example below, VSEARCH will identify sequences in the file database.fsa t

**Source distribution** To download the source distribution from a [release](https://github.com/torognes/vsearch/releases) and build the executable and the documentation using Autotools, use the following commands:
```
wget https://github.com/torognes/vsearch/archive/v1.4.3.tar.gz
tar xzf v1.4.3.tar.gz
cd vsearch-1.4.3
wget https://github.com/torognes/vsearch/archive/v1.4.4.tar.gz
tar xzf v1.4.4.tar.gz
cd vsearch-1.4.4
./autogen.sh
./configure
make
Expand All @@ -58,21 +58,21 @@ make
make install # as root or sudo make install
```

**Binary distribution** Starting with version 1.4.3, binary distribution files (.tar.gz) for GNU/Linux on x86-64 and Apple Mac OS X on x86-64 containing pre-compiled binaries as well as the documentation (man and pdf files) will be made available as part of each [release](https://github.com/torognes/vsearch/releases). The included executables include support for input files compressed by zlib and bzip2 (with files usually ending in `.gz` or `.bz2`). Download the appropriate executable for your system using the following commands if you are using a Linux system:
**Binary distribution** Starting with version 1.4.4, binary distribution files (.tar.gz) for GNU/Linux on x86-64 and Apple Mac OS X on x86-64 containing pre-compiled binaries as well as the documentation (man and pdf files) will be made available as part of each [release](https://github.com/torognes/vsearch/releases). The included executables include support for input files compressed by zlib and bzip2 (with files usually ending in `.gz` or `.bz2`). Download the appropriate executable for your system using the following commands if you are using a Linux system:

```sh
wget https://github.com/torognes/vsearch/releases/download/v1.4.3/vsearch-1.4.3-linux-x86_64.tar.gz
tar xzf vsearch-1.4.3-linux-x86_64.tar.gz
wget https://github.com/torognes/vsearch/releases/download/v1.4.4/vsearch-1.4.4-linux-x86_64.tar.gz
tar xzf vsearch-1.4.4-linux-x86_64.tar.gz
```

Or these commands if you are using a Mac:

```sh
wget https://github.com/torognes/vsearch/releases/download/v1.4.3/vsearch-1.4.3-osx-x86_64.tar.gz
tar xzf vsearch-1.4.3-osx-x86_64.tar.gz
wget https://github.com/torognes/vsearch/releases/download/v1.4.4/vsearch-1.4.4-osx-x86_64.tar.gz
tar xzf vsearch-1.4.4-osx-x86_64.tar.gz
```

You will now have the binary distribution in a folder called something like `vsearch-1.4.3-linux-x86_64` in which you will find three subfolders `bin`, `man` and `doc`. We recommend making a copy or a symbolic link to the vsearch binary `bin/vsearch` in a folder included in your `$PATH`, and a copy or a symbolic link to the vsearch man page `man/vsearch.1` in a folder included in your `$MANPATH`. The PDF version of the manual is available in `doc/vsearch_manual.pdf`.
You will now have the binary distribution in a folder called something like `vsearch-1.4.4-linux-x86_64` in which you will find three subfolders `bin`, `man` and `doc`. We recommend making a copy or a symbolic link to the vsearch binary `bin/vsearch` in a folder included in your `$PATH`, and a copy or a symbolic link to the vsearch man page `man/vsearch.1` in a folder included in your `$MANPATH`. The PDF version of the manual is available in `doc/vsearch_manual.pdf`.


**Binaries** Older VSEARCH binaries (until version 1.1.3) are available [here](https://github.com/torognes/vsearch/releases) for [GNU/Linux on x86-64 systems](https://github.com/torognes/vsearch/blob/master/bin/vsearch-1.1.3-linux-x86_64) and [Apple Mac OS X on x86-64 systems](https://github.com/torognes/vsearch/blob/master/bin/vsearch-1.1.3-osx-x86_64). These executables include support for input files compressed by zlib and bzip2 (with files usually ending in `.gz` or `.bz2`). Download the appropriate executable and make a symbolic link to the vsearch binary in a folder included in your `$PATH`. You may use the following commands, assuming `~/bin` is in your `$PATH` (substitute `linux` with `osx` in those lines if you're on a Mac):
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2 changes: 1 addition & 1 deletion configure.ac
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Expand Up @@ -2,7 +2,7 @@
# Process this file with autoconf to produce a configure script.

AC_PREREQ([2.63])
AC_INIT([vsearch], [1.4.3], [[email protected]])
AC_INIT([vsearch], [1.4.4], [[email protected]])
AM_INIT_AUTOMAKE([subdir-objects])
AC_LANG([C++])
AC_CONFIG_SRCDIR([src/vsearch.cc])
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3 changes: 3 additions & 0 deletions man/vsearch.1
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Expand Up @@ -2010,6 +2010,9 @@ zlib 1.2.3 and earlier.
.BR v1.4.3\~ "released October 3rd, 2015"
Fix a bug with determining amount of memory on some versions of Apple
OS X.
.TP
.BR v1.4.4\~ "released October 3rd, 2015"
Remove debug message.
.RE
.LP
.\" ============================================================================
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2 changes: 0 additions & 2 deletions src/arch.cc
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Expand Up @@ -78,7 +78,6 @@ unsigned long arch_get_memtotal()
{
#if defined(__APPLE__)

printf("Using sysctl\n");
int mib [] = { CTL_HW, HW_MEMSIZE };
int64_t ram = 0;
size_t length = sizeof(ram);
Expand All @@ -88,7 +87,6 @@ unsigned long arch_get_memtotal()

#elif defined(_SC_PHYS_PAGES) && defined(_SC_PAGESIZE)

printf("Using sysconf\n");
long phys_pages = sysconf(_SC_PHYS_PAGES);
long pagesize = sysconf(_SC_PAGESIZE);
if ((phys_pages == -1) || (pagesize == -1))
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