Upgrading check_code workflow to pv513

.github/workflows/check.yml

@@ -22,7 +22,7 @@ concurrency:
   cancel-in-progress: true
 
 env:
-  PV_TAG: v5.12.0-headless
+  PV_TAG: v5.13.0-headless
   PV_REPO: topology-tool-kit/ttk-paraview
 
 
@@ -35,7 +35,7 @@ jobs:
   check-formatting:
     runs-on: ubuntu-22.04
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: Install latest clang-format
       run: |
@@ -97,7 +97,7 @@ jobs:
       CMAKE_EXPORT_COMPILE_COMMANDS: ON
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: Install Ubuntu dependencies
       run: |
@@ -161,6 +161,7 @@ jobs:
 
     - name: Check Doxygen documentation warnings
       if: matrix.config.dox
+      continue-on-error: true
       run: |
         cd build
         ! cmake --build . --target doc |& grep warning
@@ -182,7 +183,7 @@ jobs:
       CMAKE_EXPORT_COMPILE_COMMANDS: ON
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: Install Ubuntu dependencies
       run: |

.github/workflows/test.yml

@@ -92,7 +92,6 @@ jobs:
       run: |
         sudo apt install ./ttk-paraview-headless.deb
 
-    # TODO: more aggressive warnings? (ubuntu-24.04)
     - name: Create & configure TTK build directory
       run: |
         mkdir build
@@ -210,6 +209,8 @@ jobs:
         # remove buggy example
         # related issue: https://github.com/topology-tool-kit/ttk/issues/1055
         rm ttk-data/states/nestedTrackingFromOverlap.py
+        # remove examples which fill up the memory
+        rm ttk-data/states/topologicalOptimization_darkSky.pvsm
 
         cd ttk-data/tests
         mkdir output_screenshots
@@ -241,6 +242,8 @@ jobs:
         # remove buggy example
         # related issue: https://github.com/topology-tool-kit/ttk/issues/1055
         rm python/nestedTrackingFromOverlap.py
+        # remove examples which fill up the memory
+        rm python/topologicalOptimization_darkSky.py
         python3 -u python/run.py
 
     - name: Test ttk-data Python scripts results [NOT ENFORCED]
@@ -373,6 +376,8 @@ jobs:
         # remove buggy example
         # related issue: https://github.com/topology-tool-kit/ttk/issues/1055
         rm ttk-data/states/nestedTrackingFromOverlap.py
+        # remove examples which fill up the memory
+        rm ttk-data/states/topologicalOptimization_darkSky.pvsm
         cd ttk-data/tests
         mkdir output_screenshots
         pvpython -u validate.py || (tar zcf screenshots.tar.gz output_screenshots && false)
@@ -393,6 +398,8 @@ jobs:
         # remove buggy example
         # related issue: https://github.com/topology-tool-kit/ttk/issues/1055
         rm python/nestedTrackingFromOverlap.py
+        # remove examples which fill up the memory
+        rm python/topologicalOptimization_darkSky.py
         pvpython -u python/run.py
       env:
         PV_PLUGIN_PATH: /usr/local/bin/plugins/TopologyToolKit
@@ -575,6 +582,8 @@ jobs:
         set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins
         cd ttk-data
         rm python/nestedTrackingFromOverlap.py
+        # remove examples which fill up the memory
+        rm python/topologicalOptimization_darkSky.py
         pvpython.exe -u python\run.py
 
     - name: Test ttk-data Python scripts results [NOT ENFORCED]

core/vtk/ttkMorseSmaleComplex/ttkMorseSmaleComplex.h

@@ -100,6 +100,9 @@
 ///   href="https://topology-tool-kit.github.io/examples/tectonicPuzzle/">Tectonic
 ///   Puzzle example</a> \n
 ///   - <a
+///   href="https://topology-tool-kit.github.io/examples/topologicalOptimization_darkSky//">Topological
+///   Optimization DarkSky</a>\n
+///   - <a
 ///   href="https://topology-tool-kit.github.io/examples/tribute/">Tribute
 ///   example</a> \n
 ///

core/vtk/ttkPersistenceDiagram/ttkPersistenceDiagram.h

@@ -143,6 +143,9 @@
 ///   href="https://topology-tool-kit.github.io/examples/tectonicPuzzle/">Tectonic
 ///   Puzzle example</a> \n
 ///   - <a
+///   href="https://topology-tool-kit.github.io/examples/topologicalOptimization_darkSky//">Topological
+///   Optimization DarkSky</a>\n
+///   - <a
 ///   href="https://topology-tool-kit.github.io/examples/tribute/">Tribute
 ///   example</a> \n
 ///   - <a

core/vtk/ttkScalarFieldSmoother/ttkScalarFieldSmoother.h

@@ -49,6 +49,9 @@
 ///   - <a
 ///   href="https://topology-tool-kit.github.io/examples/persistentGenerators_darkSky/">Persistent
 ///   Generators Dark Sky example</a> \n
+///   - <a
+///   href="https://topology-tool-kit.github.io/examples/topologicalOptimization_darkSky//">Topological
+///   Optimization DarkSky</a>\n
 
 #pragma once
 

core/vtk/ttkTopologicalSimplification/ttkTopologicalSimplification.h

@@ -116,6 +116,9 @@
 ///   href="https://topology-tool-kit.github.io/examples/tectonicPuzzle/">Tectonic
 ///   Puzzle example</a> \n
 ///   - <a
+///   href="https://topology-tool-kit.github.io/examples/topologicalOptimization_darkSky//">Topological
+///   Optimization DarkSky</a>\n
+///   - <a
 ///   href="https://topology-tool-kit.github.io/examples/tribute/">Tribute
 ///   example</a> \n
 ///   - <a