[pv513] Final patchset fix #1300
Workflow file for this run
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| name: test_build | |
| on: | |
| push: | |
| # triggered on commit pushes on the "dev" branch | |
| branches: | |
| - 'dev' | |
| # triggered on tag pushes with tags beginning with either "v" or "dev" | |
| tags: | |
| - 'v*' | |
| - 'dev*' | |
| - 'ci*' | |
| - 'build*' | |
| - 'test*' | |
| pull_request: | |
| # also triggered by pull requests on the "dev" branch | |
| branches: | |
| - 'dev' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| PV_TAG: v5.12.0-headless | |
| PV_REPO: topology-tool-kit/ttk-paraview | |
| jobs: | |
| # ------------------# | |
| # Test Ubuntu build # | |
| # ------------------# | |
| test-build-ubuntu: | |
| runs-on: ${{ matrix.os }} | |
| # trigger job when push event on a branch (not on a tag) only for | |
| # the "topology-tool-kit/ttk" repository | |
| # (pull-requests and tag pushes not affected) | |
| if: ${{ github.repository_owner == 'topology-tool-kit' || !contains(github.ref, 'heads') }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-22.04] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout TTK source code | |
| - name: Install Ubuntu dependencies | |
| run: | | |
| sudo apt update | |
| # TTK dependencies | |
| sudo apt install -y \ | |
| cargo \ | |
| libboost-system-dev \ | |
| libeigen3-dev \ | |
| libgraphviz-dev \ | |
| libosmesa-dev \ | |
| libopenmpi-dev \ | |
| libsqlite3-dev \ | |
| libwebsocketpp-dev \ | |
| graphviz \ | |
| ninja-build \ | |
| zlib1g-dev \ | |
| libqhull-dev \ | |
| dpkg-dev | |
| sudo python3 -m pip install scikit-learn | |
| cargo install sccache --version 0.4.2 --locked | |
| echo "PATH=/root/.cargo/bin:$PATH" >> $GITHUB_ENV | |
| - name: Install and setup sccache | |
| uses: f3d-app/sccache-setup-action@v1 | |
| with: | |
| key: ${{ matrix.os }}-0 | |
| - name: Install optional dependencies | |
| uses: ./.github/actions/install-deps-unix | |
| # TODO: try to replicate for mac | |
| - name: Install Torch | |
| shell: bash | |
| run: | | |
| wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.3.1%2Bcpu.zip | |
| unzip libtorch-cxx11-abi-shared-with-deps-2.3.1+cpu.zip | |
| sudo cp -R libtorch/* /usr/local/ | |
| - name: Fetch TTK-ParaView headless Debian package | |
| run: | | |
| wget -O ttk-paraview-headless.deb \ | |
| https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-${{ matrix.os }}.deb | |
| - name: Install ParaView .deb | |
| run: | | |
| sudo apt install ./ttk-paraview-headless.deb | |
| - name: Create & configure TTK build directory | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_C_COMPILER_LAUNCHER=sccache \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=sccache \ | |
| -DCMAKE_INSTALL_PREFIX=/usr \ | |
| -DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \ | |
| -DTTK_BUILD_VTK_WRAPPERS=TRUE \ | |
| -DTTK_BUILD_STANDALONE_APPS=TRUE \ | |
| -DTTK_ENABLE_KAMIKAZE=TRUE \ | |
| -DTTK_ENABLE_MPI=TRUE \ | |
| -DTTK_ENABLE_CPU_OPTIMIZATION=FALSE \ | |
| -DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE \ | |
| -DTTK_IMPLICIT_PRECONDITIONS_THRESHOLD=64*64*64 \ | |
| -GNinja \ | |
| $GITHUB_WORKSPACE | |
| env: | |
| CXXFLAGS: -Werror | |
| - uses: ammaraskar/gcc-problem-matcher@master | |
| - name: Build, install TTK & package it | |
| run: | | |
| cd build | |
| cmake --build . --parallel | |
| cpack -G DEB | |
| sudo cmake --build . --target install | |
| - name: Show sccache results | |
| shell: bash | |
| run: sccache --show-stats | |
| - name: Run TTK tests | |
| uses: ./.github/actions/test-ttk-unix | |
| - name: Upload TTK .deb package for fast install in tests | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ttk-for-tests-${{ matrix.os }}.deb | |
| path: build/ttk.deb | |
| # ------------------# | |
| # Tests on ttk-data # | |
| # ------------------# | |
| run-python-screenshots-tests: | |
| runs-on: ${{ matrix.os }} | |
| needs: test-build-ubuntu | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-22.04] | |
| testSet: [pyTests, screenshotTests] | |
| steps: | |
| - name: Install Ubuntu dependencies | |
| run: | | |
| sudo apt update | |
| sudo python3 -m pip install scikit-learn | |
| - name: Install Torch | |
| shell: bash | |
| run: | | |
| wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.3.1%2Bcpu.zip | |
| unzip libtorch-cxx11-abi-shared-with-deps-2.3.1+cpu.zip | |
| sudo cp -R libtorch/* /usr/local/ | |
| - name: Fetch TTK-ParaView headless Debian package | |
| run: | | |
| wget -O ttk-paraview-headless.deb \ | |
| https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-${{ matrix.os }}.deb | |
| - name: Install ParaView .deb | |
| run: | | |
| sudo apt install ./ttk-paraview-headless.deb | |
| - name: Fetch TTK packages we just built in the test-build-ubuntu job | |
| uses: actions/[email protected] | |
| with: | |
| name: ttk-for-tests-${{ matrix.os }}.deb | |
| - name: Installing the previously built ttk package | |
| run: | | |
| sudo apt install ./ttk.deb | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: "topology-tool-kit/ttk-data" | |
| ref: "dev" | |
| path: "ttk-data" | |
| name: Checkout ttk-data | |
| - name: Resample large datasets | |
| shell: python3 {0} | |
| working-directory: ./ttk-data | |
| run: | | |
| from paraview import simple | |
| for ds in ["ctBones.vti"]: | |
| vti = simple.XMLImageDataReader(FileName=ds) | |
| rsi = simple.ResampleToImage(Input=vti) | |
| rsi.SamplingDimensions = [128, 128, 128] | |
| simple.SaveData(ds, rsi) | |
| - name: Run ttk-data states [NOT ENFORCED] | |
| if: matrix.testSet == 'screenshotTests' | |
| id: validate | |
| continue-on-error: true | |
| run: | | |
| VERS=$(hostnamectl | grep "Operating System") | |
| # Ubuntu 22.04 OOM killer also kills the parent process... | |
| if [[ "$VERS" == *"22.04"* ]]; then | |
| rm ttk-data/states/mergeTreeClustering.pvsm | |
| rm ttk-data/states/mergeTreePGA.pvsm | |
| rm ttk-data/states/mergeTreeTemporalReduction.pvsm | |
| rm ttk-data/states/persistentGenerators_darkSky.pvsm | |
| fi | |
| cd ttk-data/tests | |
| mkdir output_screenshots | |
| if ! python3 -u validate.py; then | |
| if [[ "$VERS" == *"22.04"* ]]; then | |
| # weird opacity difference between the two Ubuntus | |
| rm -f output_screenshots/clusteringKelvinHelmholtzInstabilities_1.png | |
| rm -f output_screenshots/clusteringKelvinHelmholtzInstabilities_2.png | |
| fi | |
| if [ "$(ls -A output_screenshots)" ]; then | |
| tar zcf screenshots.tar.gz output_screenshots | |
| false | |
| fi | |
| fi | |
| - name: Upload result screenshots | |
| if: steps.validate.outcome == 'failure' && matrix.testSet == 'screenshotTests' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: screenshots-${{ matrix.os }}.tar.gz | |
| path: ttk-data/tests/screenshots.tar.gz | |
| retention-days: 10 | |
| - name: Run ttk-data Python scripts | |
| if: matrix.testSet == 'pyTests' | |
| run: | | |
| cd ttk-data | |
| python3 -u python/run.py | |
| - name: Test ttk-data Python scripts results [NOT ENFORCED] | |
| if: matrix.testSet == 'pyTests' | |
| continue-on-error: true | |
| run: | | |
| cd ttk-data | |
| cat python/res.json | |
| diff python/hashes/${{ matrix.os }}.json python/res.json | |
| - name: Delete TTK package artifact | |
| uses: geekyeggo/delete-artifact@v2 | |
| # delete package only once | |
| if: matrix.testSet == 'screenshotTests' | |
| with: | |
| name: ttk-for-tests-${{ matrix.os }}.deb | |
| # -----------------# | |
| # Test macOS build # | |
| # -----------------# | |
| test-build-macos: | |
| runs-on: macos-12 | |
| if: ${{ github.repository_owner == 'topology-tool-kit' || !contains(github.ref, 'heads') }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout TTK source code | |
| - name: Remove hosted Python | |
| run: | | |
| sudo rm -rf /Library/Frameworks/Python.framework/ | |
| sudo rm -rf /usr/local/Frameworks/Python.framework/ | |
| - name: Install macOS dependencies | |
| run: | | |
| # ParaView dependencies | |
| brew reinstall python | |
| brew install --cask xquartz | |
| brew install llvm ninja open-mpi | |
| # TTK dependencies | |
| brew install boost eigen graphviz numpy qhull | |
| - name: Install and setup sccache | |
| uses: f3d-app/sccache-setup-action@v1 | |
| with: | |
| key: macos-0 | |
| - name: Install optional dependencies | |
| uses: ./.github/actions/install-deps-unix | |
| - name: Fetch TTK-ParaView headless macOS binary archive | |
| run: | | |
| wget https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless-macos-12.tar.gz | |
| - name: Install ParaView | |
| run: | | |
| tar xzf ttk-paraview-headless-macos-12.tar.gz | |
| sudo cp -r ttk-paraview/* /usr/local | |
| pvpython -m pip install --break-system-packages scikit-learn | |
| - name: Set compilers as environment variables | |
| run: | | |
| echo "CC=$(brew --prefix llvm)/bin/clang" >> $GITHUB_ENV | |
| echo "CXX=$(brew --prefix llvm)/bin/clang++" >> $GITHUB_ENV | |
| - name: Create & configure TTK build directory | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_C_COMPILER_LAUNCHER=sccache \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=sccache \ | |
| -DTTK_BUILD_PARAVIEW_PLUGINS=TRUE \ | |
| -DTTK_BUILD_VTK_WRAPPERS=TRUE \ | |
| -DTTK_BUILD_STANDALONE_APPS=TRUE \ | |
| -DTTK_ENABLE_KAMIKAZE=TRUE \ | |
| -DTTK_ENABLE_MPI=TRUE \ | |
| -DTTK_ENABLE_CPU_OPTIMIZATION=FALSE \ | |
| -DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE \ | |
| -DTTK_IMPLICIT_PRECONDITIONS_THRESHOLD=64*64*64 \ | |
| -GNinja \ | |
| $GITHUB_WORKSPACE | |
| env: | |
| CXXFLAGS: -Werror | |
| - uses: ammaraskar/gcc-problem-matcher@master | |
| - name: Build & install TTK | |
| run: | | |
| cd build | |
| cmake --build . --parallel | |
| sudo cmake --build . --target install | |
| - name: Show sccache results | |
| shell: bash | |
| run: sccache --show-stats | |
| - name: Set PYTHONPATH for macOS pvpython | |
| run: | | |
| # pvpython does not embed the correct PYTHONPATH | |
| echo "PYTHONPATH=/usr/local/lib/python3.12/site-packages:$PYTHONPATH" >> $GITHUB_ENV | |
| - name: Run TTK tests | |
| uses: ./.github/actions/test-ttk-unix | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: "topology-tool-kit/ttk-data" | |
| ref: "dev" | |
| path: "ttk-data" | |
| name: Checkout ttk-data | |
| - name: Run ttk-data states [NOT ENFORCED] | |
| if: false | |
| id: validate | |
| continue-on-error: true | |
| run: | | |
| cd ttk-data/tests | |
| mkdir output_screenshots | |
| pvpython -u validate.py || (tar zcf screenshots.tar.gz output_screenshots && false) | |
| env: | |
| PV_PLUGIN_PATH: /usr/local/bin/plugins/TopologyToolKit | |
| - name: Upload result screenshots | |
| if: steps.validate.outcome == 'failure' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: screenshots-macOS.tar.gz | |
| path: ttk-data/tests/screenshots.tar.gz | |
| retention-days: 10 | |
| - name: Run ttk-data Python scripts | |
| run: | | |
| cd ttk-data | |
| pvpython -u python/run.py | |
| env: | |
| PV_PLUGIN_PATH: /usr/local/bin/plugins/TopologyToolKit | |
| - name: Test ttk-data Python scripts results [NOT ENFORCED] | |
| continue-on-error: true | |
| run: | | |
| cd ttk-data | |
| cat python/res.json | |
| diff python/hashes/macOS.json python/res.json | |
| # ------------------ # | |
| # Test Windows build # | |
| # ------------------ # | |
| test-build-windows: | |
| runs-on: windows-2022 | |
| if: ${{ github.repository_owner == 'topology-tool-kit' || !contains(github.ref, 'heads') }} | |
| env: | |
| PV_DIR: C:\Program Files\TTK-ParaView | |
| TTK_DIR: C:\Program Files (x86)\ttk | |
| CONDA_ROOT: C:\Miniconda | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout TTK source code | |
| - uses: s-weigand/setup-conda@v1 | |
| - name: Install dependencies with conda | |
| shell: bash | |
| run: | | |
| conda install -c conda-forge libboost-devel glew eigen spectralib zfp \ | |
| scikit-learn graphviz ninja python=3.10 zlib qhull llvm-openmp clangxx | |
| # add TTK & ParaView install folders to PATH | |
| echo "$PV_DIR/bin" >> $GITHUB_PATH | |
| echo "$TTK_DIR/bin" >> $GITHUB_PATH | |
| conda info --all | |
| - name: Install and setup sccache | |
| uses: f3d-app/sccache-setup-action@v1 | |
| with: | |
| key: windows-0 | |
| - name: Remove hosted Python | |
| shell: bash | |
| run: | | |
| rm -rf C:/hostedtoolcache/windows/Python | |
| - name: Fetch TTK-ParaView headless Windows installer | |
| run: | | |
| curl.exe -OL https://github.com/${{ env.PV_REPO }}/releases/download/${{ env.PV_TAG }}/ttk-paraview-headless.exe | |
| - name: Install ParaView | |
| shell: cmd | |
| run: | | |
| ttk-paraview-headless.exe /S | |
| - name: Create & configure TTK build directory | |
| shell: cmd | |
| run: | | |
| set CMAKE_PREFIX_PATH=%CONDA_ROOT%\Library\lib\cmake;%CONDA_ROOT%\Library\share\eigen3\cmake;%CONDA_ROOT%\Library\share\Qull\cmake;%CONDA_ROOT%\Library\cmake;%ProgramFiles%\TTK-ParaView\lib\cmake; | |
| set CC=clang-cl.exe | |
| set CXX=clang-cl.exe | |
| call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| mkdir build | |
| cd build | |
| cmake ^ | |
| -DCMAKE_BUILD_TYPE=Release ^ | |
| -DCMAKE_POLICY_DEFAULT_CMP0092=NEW ^ | |
| -DCMAKE_POLICY_DEFAULT_CMP0074=NEW ^ | |
| -DBUILD_SHARED_LIBS:BOOL=TRUE ^ | |
| -DCMAKE_C_COMPILER_LAUNCHER=sccache ^ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=sccache ^ | |
| -DPython3_ROOT_DIR="%CONDA_ROOT%" ^ | |
| -DGraphviz_INCLUDE_DIR="%CONDA_ROOT%\Library\include\graphviz" ^ | |
| -DGraphviz_CDT_LIBRARY="%CONDA_ROOT%\Library\lib\cdt.lib" ^ | |
| -DGraphviz_GVC_LIBRARY="%CONDA_ROOT%\Library\lib\gvc.lib" ^ | |
| -DGraphviz_CGRAPH_LIBRARY="%CONDA_ROOT%\Library\lib\cgraph.lib" ^ | |
| -DGraphviz_PATHPLAN_LIBRARY="%CONDA_ROOT%\Library\lib\pathplan.lib" ^ | |
| -DZLIB_ROOT="%CONDA_ROOT%\Library" ^ | |
| -DSQLite3_ROOT="%CONDA_ROOT%\Library" ^ | |
| -DTTK_BUILD_PARAVIEW_PLUGINS=TRUE ^ | |
| -DTTK_BUILD_VTK_WRAPPERS=TRUE ^ | |
| -DTTK_BUILD_STANDALONE_APPS=TRUE ^ | |
| -DTTK_ENABLE_KAMIKAZE=TRUE ^ | |
| -DTTK_ENABLE_OPENMP=TRUE ^ | |
| -DTTK_ENABLE_CPU_OPTIMIZATION=FALSE ^ | |
| -DTTK_ENABLE_SHARED_BASE_LIBRARIES=TRUE ^ | |
| -DTTK_IMPLICIT_PRECONDITIONS_THRESHOLD=64*64*64 ^ | |
| -GNinja ^ | |
| .. | |
| env: | |
| CXXFLAGS: -Werror | |
| - name: Fix clang-cl OpenMP flags in build.ninja | |
| shell: bash | |
| run: | | |
| sed -i 's/-Xclang -fopenmp/-openmp/' build/build.ninja | |
| - name: Build & install TTK | |
| shell: cmd | |
| run: | | |
| cd build | |
| call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| cmake --build . --config Release --parallel --target install | |
| - name: Show sccache results | |
| shell: bash | |
| run: sccache --show-stats | |
| - name: Test C++ example | |
| shell: cmd | |
| run: | | |
| set CC=clang-cl.exe | |
| set CXX=clang-cl.exe | |
| call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| set CMAKE_PREFIX_PATH=%TTK_DIR%\lib\cmake;%PV_DIR%\lib\cmake | |
| cd %GITHUB_WORKSPACE%\examples\c++ | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_BUILD_TYPE=Release -GNinja .. | |
| cmake --build . --config Release --parallel | |
| ttkExample-c++.exe -i ..\..\data\inputData.off | |
| - name: Test VTK-C++ example | |
| shell: cmd | |
| run: | | |
| set CC=clang-cl.exe | |
| set CXX=clang-cl.exe | |
| call "%ProgramFiles%\Microsoft Visual Studio\2022\Enterprise\VC\Auxiliary\Build\vcvars64.bat" | |
| set CMAKE_PREFIX_PATH=%TTK_DIR%\lib\cmake;%PV_DIR%\lib\cmake | |
| cd %GITHUB_WORKSPACE%\examples\vtk-c++ | |
| mkdir build | |
| cd build | |
| cmake -DCMAKE_BUILD_TYPE=Release -GNinja .. | |
| cmake --build . --config Release --parallel | |
| ttkExample-vtk-c++.exe -i ..\..\data\inputData.vtu | |
| - name: Test Python example [TEMPORARILY NOT ENFORCED] | |
| continue-on-error: true | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%PV_DIR%\bin\Lib\site-packages;%TTK_DIR%\bin\Lib\site-packages;%CONDA_ROOT%\Lib | |
| cd %GITHUB_WORKSPACE%\examples\python | |
| python example.py ..\data\inputData.vtu | |
| - name: Test pvpython example | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%CONDA_ROOT%\Lib | |
| set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins | |
| cd %GITHUB_WORKSPACE%\examples\pvpython | |
| pvpython.exe example.py ..\data\inputData.vtu | |
| - name: Test standalone | |
| shell: cmd | |
| run: | | |
| cd %GITHUB_WORKSPACE%\examples\vtk-c++ | |
| ttkHelloWorldCmd.exe -i %GITHUB_WORKSPACE%\examples\data\inputData.vtu | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: "topology-tool-kit/ttk-data" | |
| ref: "dev" | |
| path: "ttk-data" | |
| name: Checkout ttk-data | |
| - name: Resample large datasets | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%CONDA_ROOT%\Lib | |
| set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins | |
| cd ttk-data | |
| pvpython.exe python\resample.py ctBones.vti 128 128 128 ctBones.vti | |
| - name: Run ttk-data Python scripts | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%PV_DIR%\bin\Lib\site-packages;%TTK_DIR%\bin\Lib\site-packages;%CONDA_ROOT%\Lib;%CONDA_ROOT%\DLLs | |
| set PV_PLUGIN_PATH=%TTK_DIR%\bin\plugins | |
| cd ttk-data | |
| pvpython.exe -u python\run.py | |
| - name: Test ttk-data Python scripts results [NOT ENFORCED] | |
| continue-on-error: true | |
| shell: cmd | |
| run: | | |
| cd ttk-data | |
| type python\res.json | |
| FC python\hashes\windows.json python\res.json |