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systemsbiology

Here are 12 public repositories matching this topic...

AMICI

AMICI-dev / AMICI

Advanced Multilanguage Interface to CVODES and IDAS

Updated Dec 19, 2024
Jupyter Notebook

opencobra / COBRA.tutorials

Repository of tutorials for The COBRA Toolbox

tutorials reconstruction systemsbiology cobra metabolic-models constraint-based-modeling cobratoolbox

Updated Nov 4, 2024
MATLAB

ipw012 / RIVER

R package for RIVER (RNA-Informed Variant Effect on Regulation)

genetics clustering snp bayesian transcription geneticvariability functionalprediction generegulation genomicvariation biomedicalinformatics functionalgenomics systemsbiology transcriptomics transcriptomevariant variant functional-variants

Updated Mar 5, 2020
R

PEtab-dev / petab_test_suite

PEtab test suite

parameter-estimation testsuite systemsbiology petab

Updated Dec 20, 2024
Python

cvisb / cvisb_data

Data portal and API for Center for Viral Systems Biology (CViSB) data

biology systems-biology sequencing immunology systemsbiology hla viral-ngs viral-genomics ebola viral-metagenomics ebola-outbreak hla-database hla-typing ngs-data immunological-bioinformatics viral-diversity viral-allele lassa lassa-fever

Updated Jan 13, 2023
TypeScript

stolarczyk / metaboLITE

Shiny app for visualization of the toy GENREs

visualization docker shiny rpython network-visualization systemsbiology shinyapps cobrapy flux-balance-analysis fba toycon

Updated Jul 14, 2021
R

pulimeng / Biology-Network-Reduction

Graph representation for system biology networks and the reduction of them for machine learning purposes

systemsbiology ppi-networks

Updated Apr 11, 2023
Python

gabrielet / posters

posters that i presented at the conferences i attended as a phd student and postdoc

bioinformatics network-analysis systemsbiology

Updated Jul 17, 2023

biplabbose / Intro_Dynamical_Models_Biology

"Introduction to Dynamical Models in Biology" is an NPTEL online course. Slides of the lectures and codes used in this course are maintained in this repository. https://youtube.com/playlist?list=PLAr_6rURpoVinZGlJAKwBGuQjLWSU_fvv&si=_wdCqCK_lwdLzWtx

biology modeling systemsbiology

Updated Jun 13, 2024

Joshuajulio / Srapamycinicus_metabolic_network_analysis

Analyzing the impact of the large deletion on the metabolic level by using genome-scale metabolic network (GEM)

systemsbiology

Updated Jun 22, 2022
Jupyter Notebook

AM-Abhi / mathmodel

To analyze the Mathematical Model for ODE systems.

analysis python3 systemsbiology mathmodel mathmodeling

Updated Apr 30, 2022
Python

resendislab / resendislab.github.io

The (rendered) website of the Resendis lab. Do not send PRs here! Use https://github.com/resendislab/website instead!

bioinformatics genomics cancer systems-biology computational-biology systemsbiology computational-science genomic-sciences sciences

Updated Sep 10, 2024
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