CRASHS: Cortical Reconstruction for Automatic Segmentation of Hippocampal Subfields (ASHS)
-
Updated
Sep 17, 2024 - Jupyter Notebook
CRASHS: Cortical Reconstruction for Automatic Segmentation of Hippocampal Subfields (ASHS)
Computational Cognitive Neuroscience textbook
Axon is a spiking, biologically-based neural model driven by predictive error-driven learning, for systems-level models of the brain
State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
A python package for simulating 2D motion in continuous environment and spatial cell types (e.g. place cell).
Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
3D-UCaps: 3D Capsules Unet for Volumetric Image Segmentation (MICCAI 2021)
Initial exploratory code into coherence at track points of interest.
An open-source package that offer fully-functional spike-based bio-inspired hippocampal memory models implemented with SNN technology in the SpiNNaker hardware in Python
The old, outdated code for my hippocampal morphometry pipeline.
This repository contains all the files and related directions to implement in MATLAB environment the episodic memory model developed by Pirazzini and Ursino in “Modeling the contribution of theta-gamma coupling to sequential memory, imagination, and dreaming, Frontiers in Neural Circuits, 2024” (DOI: https://doi.org/10.3389/fncir.2024.1326609)
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
Full-scale biophysical model of the dentate gyrus
Full-scale biophysical model of the dentate gyrus
AICONSlab's hippocampal segmentation algorithm using CNNs
Hippocampal Segmentation Factory (HSF). A one-liner Deep Learning tool to segment raw T2w (and T1w) MRIs into hippocampal subfields in few seconds. Trained on 700+ manually segmented hippocampi.
This work showcases a variational graph autoencoder disentanglement using 3D mesh data.
ScanHippoHealth: MRI segmentation using 3D-Unet on Medical Segmentation Decathlon data. Flask app with secure authentication, predicting and displaying six slices of input MRI alongside masks for precise hippocampus segmentation. Contributions welcome to enhance medical image analysis for better diagnostics.
Add a description, image, and links to the hippocampus topic page so that developers can more easily learn about it.
To associate your repository with the hippocampus topic, visit your repo's landing page and select "manage topics."