SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.
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Feb 23, 2025 - Jupyter Notebook
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coexpression-network
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A step-by-step tutorial for Weighted correlation network analysis (WGCNA) applied to see differential disease severity immune response in Dengue infected large indian cohort.
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Dec 25, 2024 - R
Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
docker nginx flask bioinformatics transcription-factors genomics rice agriculture community-detection uwsgi dash cytoscape enrichment-analysis agriculture-research coexpression-network transcription-factor-binding-site post-gwas qtl-analysis interactive-dashboard
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Feb 13, 2025 - Python
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Oct 15, 2018 - R
The TRN inference and regulon enrichment analysis was done with RTN v. 2.10.1 (Fletcher, Castro et al. 2013) and topGO v. 2.38.1 (Alexa and Rahnenfuhrer 2010). The code is fully available as a R notebook.
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Feb 25, 2021 - HTML
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Oct 18, 2024 - Rust
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