Software for predicting library complexity and genome coverage in high-throughput sequencing.

Fit multievent capture-recapture models in R (maximum-likelihood), Nimble and JAGS (Bayesian)

Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble

material for a review on capture-recapture methods and questions

Bayesian implementation of capture-recapture models with robust design

R package to perform goodness-of-fit tests for capture-recapture models (and various manipulations)

material for a workshop on Bayesian capture-recapture inference with hidden Markov models in Nimble

R and Jags codes to estimate fitness using capture-recapture data

This repository holds the source materials used for a working group/symposium on capture-recapture models and social networks, and an introduction to capture-recapture models in nimble to estimate demographic parameters.

Contains functions to simulate data from and fit SIR multievent models

Resources that might come handy to anyone using spatially explicit mark-capture-recapture models.

Illustrate CR models with individual heterogeneity (multistate, random-effect, finite-mixture)

Estimate abundance using capture-recapture models

Fit principal component capture-recapture model to snow petrel data

Seasonal survival analysis of the gray mouse lemur population in Kirindy Forest, Madagascar using multistate capture-recapture models.

Illustrate solutions to avoid local minima in multistate capture-recapture models