A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Damage parameter estimation for ancient DNA
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.
Coprolite host Identification pipeline
A beginner's guide to aDNA analysis, including scripts to streamline the process.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
Uncertainty estimation toolkit for dimensionality reduction on population genetics data.
A toolset to work with modular genotype databases in the Poseidon format
R Package - Spatiotemporal Ancestry Interpolation and Search
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
A pipeline for the analysis of sedimentary ancient mtDNA
Main landing page for getting information about the Poseidon project
🗑️🦷 decOM 🦷🗑️
Statement of the Ethics Discussion Group at the Department of Archaeogenetics (MPI-SHH/MPI-EVA)
Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084
Add a description, image, and links to the ancient-dna topic page so that developers can more easily learn about it.
To associate your repository with the ancient-dna topic, visit your repo's landing page and select "manage topics."