[pre-commit.ci] pre-commit autoupdate (#195)

<!--pre-commit.ci start-->
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 →
v4.6.0](pre-commit/pre-commit-hooks@v4.5.0...v4.6.0)
- [github.com/astral-sh/ruff-pre-commit: v0.1.14 →
v0.3.7](astral-sh/ruff-pre-commit@v0.1.14...v0.3.7)
- [github.com/pre-commit/mirrors-clang-format: v17.0.6 →
v18.1.3](pre-commit/mirrors-clang-format@v17.0.6...v18.1.3)
- [github.com/MarcoGorelli/cython-lint: v0.16.0 →
v0.16.2](MarcoGorelli/cython-lint@v0.16.0...v0.16.2)
<!--pre-commit.ci end-->

---------

Signed-off-by: Jinzhe Zeng <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Jinzhe Zeng <[email protected]>

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
     # there are many log files in tests
     # TODO: seperate py files and log files
@@ -16,7 +16,7 @@ repos:
     -   id: check-toml
 # Python
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.14
+    rev: v0.3.7
     hooks:
     - id: ruff
       args: ["--fix"]
@@ -29,12 +29,12 @@ repos:
       args: ["--write"]
 # C++
 -   repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v17.0.6
+    rev: v18.1.3
     hooks:
     -   id: clang-format
 # Cython
 -   repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.0
+    rev: v0.16.2
     hooks:
     -   id: cython-lint
     -   id: double-quote-cython-strings

mddatasetbuilder/detect.py

@@ -1,4 +1,5 @@
 """Detect from trajectory."""
+
 import pickle
 from abc import ABCMeta, abstractmethod
 from collections import defaultdict

mddatasetbuilder/utils.py

@@ -1,4 +1,5 @@
 """Utils."""
+
 import itertools
 import pickle
 from multiprocessing import Pool, Semaphore

tests/test_bond.py

@@ -1,4 +1,5 @@
 """Test detecting bonds."""
+
 import numpy as np
 from ase import Atoms
 

tests/test_datasetbuilder.py

@@ -1,6 +1,5 @@
 """Test."""
 
-
 import hashlib
 import json
 import math