v0.2.63

Download tidk 0.2.63

File	Platform	Checksum
tidk-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
tidk-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
tidk-x86_64-pc-windows-msvc.zip	x64 Windows	checksum
tidk-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum

v0.2.62

Download tidk 0.2.62

The release to accompany the upcoming paper. A potential breaking change is the renaming of the headers in tidk explore. A major new addition is fetching the tidk database from this repository, rather than building an embedded database.

Changelog:

• Max Brown on 2024-09-16: Update README.md for tidk build.
• Max Brown on 2024-09-16: Bump version. Clean up clades directory.
• Max Brown on 2024-09-16: Can now build a version controlled database via tidk build.
• Max Brown on 2024-09-09: Remove unneeded htslib dependency from Cargo.toml.
• Max Brown on 2024-06-01: Better TSV heading for explore output. Remove redundant comments.
• Max Brown on 2024-05-31: Update Bombus assembly reference.
• Max Brown on 2024-05-31: Clippy vector fix.
• Max Brown on 2024-05-31: Bug in merging telomeric repeats in hashmap.
• Max Brown on 2024-05-31: Bump version and add back cmake.
• Max Brown on 2024-02-22: feat: add extra parameters to plot.
• Max Brown on 2023-11-09: chore: Update README and Cargo.lock

It's also the first time I am using cargo-dist. So I hope it all works...

File	Platform	Checksum
tidk-aarch64-apple-darwin.tar.xz	Apple Silicon macOS	checksum
tidk-x86_64-apple-darwin.tar.xz	Intel macOS	checksum
tidk-x86_64-pc-windows-msvc.zip	x64 Windows	checksum
tidk-x86_64-unknown-linux-gnu.tar.xz	x64 Linux	checksum

Dahliaphyllum

Main changes in this release are a curated telomeric database in-built, along with some more comprehensive testing.

Changelog:

• build: Update version number in Cargo.toml for releases on Sat, 4 Nov 2023 13:58:40 +0000
• docs: README updated for latest release on Sat, 4 Nov 2023 13:55:18 +0000
• fix: Debug statements removed, and useless extension required by default in tidk search on Sat, 4 Nov 2023 13:48:20 +0000
• A new file has been added, curated.csv, which is a curated telomeric repeat database based on 500 genomes from the DToL project. This is the current cut-off for the paper which is being submitted soon. There are corresponding changes in the clades.rs file, which is smaller and more accurate, removing many dubious telomeric repeat entries. on Fri, 6 Oct 2023 12:21:50 +0100
• Bump version. on Wed, 27 Sep 2023 22:33:18 +0100
• Bump version. on Wed, 27 Sep 2023 22:32:41 +0100
• This commit addresses issues #18 and #19. on Sun, 10 Sep 2023 17:39:16 +0100
• Distance option cannot be greater than 0.5 on Sun, 2 Apr 2023 21:36:30 +0100
• Refactor of explore code. Added more comprehensive testing. on Sun, 2 Apr 2023 21:35:54 +0100
• Edit LMS function to account for third string rotation possibility. on Sun, 2 Apr 2023 21:31:52 +0100

Anchonium

This is a major overhaul of the algorithm behind tidk explore, and as a result the code is much shorter, cleaner, and more accurate.

Other changes are complete updates of all dependencies, especially clap which required much CLI refactoring.

Apologies for the terrible commit messages in advance.

• Add older cmake dependency for unix build, on Sat, 18 Feb 2023 10:06:32 +0000
• Update Cargo.toml dependecy for crates.io publish, on Sat, 18 Feb 2023 09:26:21 +0000
• Updates to README, and minor change to plot cli doc., on Sat, 18 Feb 2023 09:03:58 +0000
• Add error handling for new fasta chunking. Edit verbosity behaviour for explore., on Fri, 17 Feb 2023 21:36:43 +0000
• Add badges to README.md, on Wed, 15 Feb 2023 21:29:56 +0000
• Add badges to README.md, on Wed, 15 Feb 2023 21:29:12 +0000
• Updates to README and a few minor changes to a few other files., on Wed, 15 Feb 2023 20:58:26 +0000
• Few clippy fixes., on Wed, 15 Feb 2023 17:34:31 +0000
• Finalise tests and update explore code., on Wed, 15 Feb 2023 16:46:24 +0000
• Switch to new branch for major update., on Sun, 12 Feb 2023 21:07:37 +0000

Whyanbeelia

Small release update adding a few more clades and making the errors nicer.

• Remove typo from Cargo.toml Thu, 23 Jun 2022 11:38:02 +0100
• Version update and readying for crates.io Thu, 23 Jun 2022 11:35:19 +0100
• Add unused results. Thu, 23 Jun 2022 11:28:39 +0100
• Add better errors throughout. Update clades. Add documentation. Thu, 23 Jun 2022 11:27:08 +0100

v0.2.0

Changes:

• Many more clades added into tidk find.
• Tabled crate added for displaying these clades on the terminal.
• Removed redundant modular structure, less verbose imports now, and easier to maintain in the future.
• In most subcommands the name of the output file, and the directory are now required arguments (breaking).
• Added an optional output log file for tidk explore/find/search.

Bugs:

• Bug in tidk plot removed where there was a clash in flag identity.

0.1.5

First release. To be put on conda.

Full Changelog: https://github.com/tolkit/telomeric-identifier/commits/0.1.5