nuc_contact_probability

nuc_contact_probability command options

The nuc_contact_probability command is use to create probability vs sequence separation graphs for groups of input NCC format files.

Usage

nuc_contact_probability [-h] [-i NCC_FILES [NCC_FILES ...]] [-o SVG_FILE] [-i2 [NCC_FILES [NCC_FILES ...]]] [-i3 [NCC_FILES [NCC_FILES ...]]] [-i4 [NCC_FILES [NCC_FILES ...]]] [-l [LABELS [LABELS ...]]] [-w SVG_WIDTH] [-s KB_BIN_SIZE]

Command line arguments:

-h, --help
Show command line options and exit

-i NCC_FILES [NCC_FILES ...]
Input NCC format chromatin contact file(s). Wildcards accepted

-o SVG_FILE
Output SVF format file. Use "-" to print SVG to stdout rather than make a file.

-i2 [NCC_FILES [NCC_FILES ...]]
Second group of input NCC format chromatin contact file(s). Wildcards accepted

-i3 [NCC_FILES [NCC_FILES ...]]
Third group of input NCC format chromatin contact file(s). Wildcards accepted

-i4 [NCC_FILES [NCC_FILES ...]]
Fourth group of input NCC format chromatin contact file(s). Wildcards accepted

-l [LABELS [LABELS ...]]
Text labels for groups of input files

-w SVG_WIDTH
SVG document width

-s KB_BIN_SIZE
Sequence region size in kilobases for calculation of contact probabilities. Default is 100 (kb)