Skip to content

Commit

Permalink
Re-run revdeps and update cran comments
Browse files Browse the repository at this point in the history
  • Loading branch information
@hadley
hadley committed Jan 27, 2023
1 parent bd24dfb commit 199195d
Show file tree
Hide file tree
Showing 5 changed files with 38 additions and 145 deletions.
15 changes: 12 additions & 3 deletions cran-comments.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,17 @@

## revdepcheck results

We checked 212 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
We checked 231 reverse dependencies (228 from CRAN + 3 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.

* We saw 0 new problems
* We failed to check 0 packages
We saw 2 new problems:

* epikit
* stevemisc

Both maintainers were notified on Jan 12 (~2 week ago) and supplied with patches.

We failed to check 3 packages

* genekitr (NA)
* OlinkAnalyze (NA)
* SCpubr (NA)
8 changes: 3 additions & 5 deletions revdep/README.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -11,12 +11,10 @@
|SCpubr |? | | | |
|NA |? | | | |

## New problems (4)
## New problems (2)

|package |version |error |warning |note |
|:------------|:-------|:------|:-------|:----|
|[autostats](problems.md#autostats)|0.4.0 |__+1__ |__+1__ | |
|package |version |error |warning |note |
|:---------|:-------|:------|:-------|:----|
|[epikit](problems.md#epikit)|0.1.2 |__+1__ | |1 |
|[framecleaner](problems.md#framecleaner)|0.2.0 |__+1__ | | |
|[stevemisc](problems.md#stevemisc)|1.4.1 |__+1__ | | |

11 changes: 2 additions & 9 deletions revdep/cran.md
View file
Original file line number Diff line number Diff line change
@@ -1,25 +1,18 @@
## revdepcheck results

We checked 220 reverse dependencies (217 from CRAN + 3 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
We checked 231 reverse dependencies (228 from CRAN + 3 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.

* We saw 4 new problems
* We saw 2 new problems
* We failed to check 3 packages

Issues with CRAN packages are summarised below.

### New problems
(This reports the first line of each new failure)

* autostats
checking examples ... ERROR
checking re-building of vignette outputs ... WARNING

* epikit
checking tests ... ERROR

* framecleaner
checking examples ... ERROR

* stevemisc
checking examples ... ERROR

Expand Down
42 changes: 21 additions & 21 deletions revdep/failures.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@

<details>

* Version: 1.0.8
* Version: 1.1.0
* GitHub: https://github.com/GangLiLab/genekitr
* Source code: https://github.com/cran/genekitr
* Date/Publication: 2022-11-23 11:30:02 UTC
* Date/Publication: 2023-01-20 03:30:02 UTC
* Number of recursive dependencies: 200

Run `revdepcheck::cloud_details(, "genekitr")` for more info
Expand All @@ -24,7 +24,7 @@ Run `revdepcheck::cloud_details(, "genekitr")` for more info
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genekitr’ version ‘1.0.8’
* this is package ‘genekitr’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Expand All @@ -50,7 +50,7 @@ Status: 1 ERROR
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genekitr’ version ‘1.0.8’
* this is package ‘genekitr’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Expand Down Expand Up @@ -140,10 +140,10 @@ Run `revdepcheck::cloud_details(, "NA")` for more info

<details>

* Version: 3.2.2
* Version: 3.3.0
* GitHub: NA
* Source code: https://github.com/cran/OlinkAnalyze
* Date/Publication: 2022-11-16 00:30:05 UTC
* Date/Publication: 2023-01-24 21:50:02 UTC
* Number of recursive dependencies: 202

Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info
Expand All @@ -162,7 +162,7 @@ Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OlinkAnalyze’ version ‘3.2.2’
* this is package ‘OlinkAnalyze’ version ‘3.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
...
Expand Down Expand Up @@ -192,7 +192,7 @@ Status: 1 NOTE
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OlinkAnalyze’ version ‘3.2.2’
* this is package ‘OlinkAnalyze’ version ‘3.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
...
Expand All @@ -216,11 +216,11 @@ Status: 1 NOTE

<details>

* Version: 1.1.1
* Version: 1.1.2
* GitHub: https://github.com/enblacar/SCpubr
* Source code: https://github.com/cran/SCpubr
* Date/Publication: 2023-01-12 11:30:02 UTC
* Number of recursive dependencies: 289
* Date/Publication: 2023-01-18 12:20:02 UTC
* Number of recursive dependencies: 290

Run `revdepcheck::cloud_details(, "SCpubr")` for more info

Expand All @@ -238,20 +238,20 @@ Run `revdepcheck::cloud_details(, "SCpubr")` for more info
* using option ‘--no-manual’
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SCpubr’ version ‘1.1.1’
* this is package ‘SCpubr’ version ‘1.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
...
[ FAIL 1 | WARN 0 | SKIP 347 | PASS 320 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘reference_manual.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs
Status: 1 WARNING, 2 NOTEs
Expand All @@ -268,20 +268,20 @@ Status: 1 ERROR, 1 WARNING, 2 NOTEs
* using option ‘--no-manual’
* checking for file ‘SCpubr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SCpubr’ version ‘1.1.1’
* this is package ‘SCpubr’ version ‘1.1.2’
* package encoding: UTF-8
* checking package namespace information ... OK
...
[ FAIL 1 | WARN 0 | SKIP 347 | PASS 320 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘reference_manual.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 2 NOTEs
Status: 1 WARNING, 2 NOTEs
Expand Down
107 changes: 0 additions & 107 deletions revdep/problems.md
View file
Original file line number Diff line number Diff line change
@@ -1,69 +1,3 @@
# autostats

<details>

* Version: 0.4.0
* GitHub: https://github.com/Harrison4192/autostats
* Source code: https://github.com/cran/autostats
* Date/Publication: 2022-11-07 10:20:06 UTC
* Number of recursive dependencies: 233

Run `revdepcheck::cloud_details(, "autostats")` for more info

</details>

## Newly broken

* checking examples ... ERROR
```
Running examples in ‘autostats-Ex.R’ failed
The error most likely occurred in:
> ### Name: auto_anova
> ### Title: auto anova
> ### Aliases: auto_anova
>
> ### ** Examples
>
>
...
18. ├─framecleaner:::fct_or_prob(., ...)
19. │ └─... %>% ...
20. └─forcats::fct_lump(., n = max_levels, ties.method = "first")
21. └─forcats::fct_lump_n(n = n)
22. └─forcats:::check_number_whole(n)
23. └─forcats:::.rlang_types_check_number(...)
24. └─forcats (local) .stop(x, what, ...)
25. └─forcats:::stop_input_type(...)
26. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```

* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
...
--- re-building ‘autostats.Rmd’ using rmarkdown
Quitting from lines 97-99 (autostats.Rmd)
Error: processing vignette 'autostats.Rmd' failed with diagnostics:
Problem while computing `..1 = dplyr::across(...)`.
Caused by error in `across()`:
! Problem while computing column `Species`.
Caused by error in `fct_lump_n()`:
! `n` must be a whole number, not `Inf`.
...
--- failed re-building ‘autostats.Rmd’
--- re-building ‘tidyXgboost.Rmd’ using rmarkdown
--- finished re-building ‘tidyXgboost.Rmd’
SUMMARY: processing the following file failed:
‘autostats.Rmd’
Error: Vignette re-building failed.
Execution halted
```

# epikit

<details>
Expand Down Expand Up @@ -109,47 +43,6 @@ Run `revdepcheck::cloud_details(, "epikit")` for more info
'LazyData' is specified without a 'data' directory
```

# framecleaner

<details>

* Version: 0.2.0
* GitHub: https://github.com/Harrison4192/framecleaner
* Source code: https://github.com/cran/framecleaner
* Date/Publication: 2021-11-17 05:40:02 UTC
* Number of recursive dependencies: 105

Run `revdepcheck::cloud_details(, "framecleaner")` for more info

</details>

## Newly broken

* checking examples ... ERROR
```
Running examples in ‘framecleaner-Ex.R’ failed
The error most likely occurred in:
> ### Name: set_fct
> ### Title: set factor
> ### Aliases: set_fct set_fct.data.frame set_fct.default
>
> ### ** Examples
>
>
...
16. ├─framecleaner:::fct_or_prob(., ...)
17. │ └─... %>% ...
18. └─forcats::fct_lump(., n = max_levels, ties.method = "first")
19. └─forcats::fct_lump_n(n = n)
20. └─forcats:::check_number_whole(n)
21. └─forcats:::.rlang_types_check_number(...)
22. └─forcats (local) .stop(x, what, ...)
23. └─forcats:::stop_input_type(...)
24. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```

# stevemisc

<details>
Expand Down

0 comments on commit 199195d

Please sign in to comment.