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Etn/get cgm stats#57

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ed-nykaza wants to merge 46 commits intomastertidepool-org/data-analytics:masterfrom etn/get-cgm-statstidepool-org/data-analytics:etn/get-cgm-statsCopy head branch name to clipboard

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Commits on Jul 15, 2019

• create folder and save functions

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Commits on Jul 16, 2019

• save as gzipped csv

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• capture dataset info

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Commits on Jul 17, 2019

• sort by userid instead of donor group

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• just get json file

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Commits on Jul 21, 2019

• get interim data summaries

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Commits on Jul 24, 2019

• update env to include latest spyder

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• add __init__.py and rename folders

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• get data from api

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• add path if needed

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Commits on Jul 25, 2019

• initial commit WIP

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Commits on Jul 29, 2019

• distinguish donor metadata from data metadata

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• refactor round_time

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• add upload time to data

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• handle edge case where uploadId is not given

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• apply timezoneOffset correction

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Commits on Jul 30, 2019

• refactor of estimate-local-time to handle healthkit data

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• clean cgm data

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• get cgm 5 minute time series

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Commits on Aug 7, 2019

• add new functions that get embedded json data

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Commits on Aug 8, 2019

• remove spike data

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Commits on Aug 12, 2019

• make sure there is timezone information

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Commits on Aug 13, 2019

• refactor remove spike data

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Commits on Aug 16, 2019

• wip cgm distributions

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Commits on Aug 17, 2019

• save output

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• remove collecting all metadata

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• add additional metadata to output

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• fix spike data drop bug

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Commits on Aug 19, 2019

• refactor sensing cgmModel

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• first commit of cgm stats

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• initial commit of episodes

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• next increment of episodes

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• move percentile calculations to full range of data section

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Commits on Aug 20, 2019

• get episode stats

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  4c9714a

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• minor refactor

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• resolve edge case of not having quarterly stats

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• initial commit of batch process all cgm distribution and stats

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• skip already processed and use 1/2 of processors

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Commits on Aug 21, 2019

• get results script

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• pull files into pandas with low_memory flag

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• save results in chunks

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• move files and modify print statements

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• remove combine files

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• use all processors

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Commits on Aug 22, 2019

• save json data in folder that is compatible with old pipeline

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• refactor to download data if json data path is not provided

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