upgrade speclite version #812
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| name: CI | |
| on: | |
| push: | |
| # paths-ignore: | |
| # - 'CHANGELOG.md' | |
| pull_request: | |
| schedule: | |
| - cron: "0 11 * * *" | |
| jobs: | |
| skip_duplicate: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| github_token: ${{ github.token }} | |
| concurrent_skipping: never | |
| skip_after_successful_duplicate: true | |
| paths_ignore: '["**/README.md", "**/docs/**"]' | |
| do_not_skip: '["pull_request", "schedule"]' | |
| test-conda: | |
| name: Test on Conda | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: [3.11] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test_env | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, xspecmodels, threeml, defaults | |
| environment-file: ci/environment.yml | |
| mamba-version: "*" | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| fi | |
| echo "HOME= ${HOME}" | |
| echo "Python version: ${{matrix.python-version}}" | |
| mamba install ${compilers} pytest codecov pytest-cov git astromodels threeML numba reproject root flake8 | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test it | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest -vv | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| test-master: | |
| name: Test with master threeML/astromodels | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: [3.11] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test_env | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, xspecmodels, threeml, defaults | |
| environment-file: ci/environment.yml | |
| mamba-version: "*" | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| fi | |
| echo "HOME= ${HOME}" | |
| echo "Python version: ${{matrix.python-version}}" | |
| mamba install pytest codecov pytest-cov git astromodels threeML numba reproject root flake8 | |
| pip uninstall astromodels threeML -y | |
| pip install git+https://github.com/threeml/astromodels.git | |
| pip install git+https://github.com/threeml/threeML.git | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test it | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest -vv | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| test-dev: | |
| name: Test with dev threeML/astromodels | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: [3.11] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test_env | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, xspecmodels, threeml, defaults | |
| environment-file: ci/environment.yml | |
| mamba-version: "*" | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| fi | |
| echo "HOME= ${HOME}" | |
| echo "Python version: ${{matrix.python-version}}" | |
| mamba install pytest codecov pytest-cov git astromodels threeML numba reproject root flake8 | |
| pip uninstall astromodels threeML -y | |
| pip install git+https://github.com/threeml/astromodels.git@dev | |
| pip install git+https://github.com/threeml/threeML.git@dev | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test it | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest -vv | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" |