Merge pull request #96 from torresramiro350/fixing_uproot #808
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| # paths-ignore: | |
| # - 'CHANGELOG.md' | |
| pull_request: | |
| schedule: | |
| - cron: "0 11 * * *" | |
| jobs: | |
| skip_duplicate: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| github_token: ${{ github.token }} | |
| concurrent_skipping: never | |
| skip_after_successful_duplicate: true | |
| paths_ignore: '["**/README.md", "**/docs/**"]' | |
| do_not_skip: '["pull_request", "schedule"]' | |
| test-conda: | |
| name: Test on Conda | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: [3.7] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test_env | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, xspecmodels, threeml, defaults | |
| environment-file: ci/environment.yml | |
| mamba-version: "*" | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| fi | |
| echo "HOME= ${HOME}" | |
| echo "Python version: ${{matrix.python-version}}" | |
| mamba install ${compilers} pytest codecov pytest-cov git astromodels threeML numba reproject root flake8 | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test it | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest -vv | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| test-master: | |
| name: Test with master threeML/astromodels | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: [3.7] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test_env | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, xspecmodels, threeml, defaults | |
| environment-file: ci/environment.yml | |
| mamba-version: "*" | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| fi | |
| echo "HOME= ${HOME}" | |
| echo "Python version: ${{matrix.python-version}}" | |
| mamba install pytest codecov pytest-cov git astromodels threeML numba reproject root flake8 | |
| pip uninstall astromodels threeML -y | |
| pip install git+https://github.com/threeml/astromodels.git | |
| pip install git+https://github.com/threeml/threeML.git | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test it | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest -vv | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" | |
| test-dev: | |
| name: Test with dev threeML/astromodels | |
| needs: skip_duplicate | |
| if: ${{ needs.skip_duplicate.outputs.should_skip == 'false' }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: [3.7] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: conda-${{ matrix.os }}-python-${{ matrix.python-version }}-${{ hashFiles('environment-ci-new.yml') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test_env | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, xspecmodels, threeml, defaults | |
| environment-file: ci/environment.yml | |
| mamba-version: "*" | |
| - name: Init Env | |
| shell: bash -l {0} | |
| run: | | |
| # Make sure we fail in case of error | |
| if [[ ${{matrix.os}} == ubuntu-latest ]]; | |
| then | |
| miniconda_os=Linux | |
| compilers="gcc_linux-64 gxx_linux-64" | |
| else # osx | |
| miniconda_os=MacOSX | |
| compilers="clang_osx-64 clangxx_osx-64 gfortran_osx-64" | |
| fi | |
| echo "HOME= ${HOME}" | |
| echo "Python version: ${{matrix.python-version}}" | |
| mamba install pytest codecov pytest-cov git astromodels threeML numba reproject root flake8 | |
| pip uninstall astromodels threeML -y | |
| pip install git+https://github.com/threeml/astromodels.git@dev | |
| pip install git+https://github.com/threeml/threeML.git@dev | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| - name: install it | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test it | |
| shell: bash -l {0} | |
| run: | | |
| python -m pytest -vv | |
| env: | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| NUMEXPR_NUM_THREADS: 1 | |
| MPLBACKEND: "Agg" |