Skip to content

Bioconductor 3.15
Compare
Choose a tag to compare
@lazappi lazappi released this 28 Apr 12:55
v1.6.0
8fa310b

Major changes

  • Added support for multiple {basilisk} environments with different anndata versions. Users can now specify the environment to use with options in readH5AD() and writeH5AD(). To faciliate this some exported objects were converted to functions but this should only affect developers.
  • Updated the default environment to use anndata v0.8.0. This is a major update and files written with v0.8.0 cannot be read by previous anndata versions. This was the motivation for supporting multiple environments and users can select the previous environment with anndata v0.7.6 if compatibility is required.
  • Standardise naming in AnnData2SCE(). Column names of data frames and names of list items will now be modified to match R conventions(according to make.names()). When this happens a warning will be issued listing the modifications. This makes sure than everything in the SingleCellExperiment is accessible.

Minor changes

  • Allow data.frame's stored in varm to be converted in SCE2AnnData()
  • Minor updates to the vignette and other documentation.
  • Updates to tests to match the changes above.

Full Changelog: v1.4.0...v1.6.0

Assets 2
Loading