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Add CancerFoundation #66

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Dec 19, 2024
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Add CancerFoundation #66

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3f8c113
Added CancerFoundation
FlorianBarkmann Dec 19, 2024
c44634f
Added CancerFoundation
FlorianBarkmann Dec 19, 2024
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15 changes: 15 additions & 0 deletions _data/single-cell-transformers.yml
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@@ -1,3 +1,18 @@
- model: CancerFoundation
paper:
type: preprint
text: '[Theus et al. 2024](https://doi.org/10.1101/2024.11.01.621087)'
url: https://doi.org/10.1101/2024.11.01.621087
code:
type: reproducible
text: "[ð\x9F\x9B\_ï¸\x8FGithub](https://github.com/BoevaLab/CancerFoundation)"
url: https://github.com/BoevaLab/CancerFoundation
omic_modalities: scRNA-seq
pre_training_dataset: 1M / Only malignant cells from the currated cancer cell atlas.
input_embedding: 'Value categorization: value binning'
architecture: 'Other: attention masking in encoder'
ssl_tasks: Iterative MLM variant with MSE loss, cell token expression prediction, gene expression prediction
supervised_tasks: Drug response prediction
- model: Precious3GPT
paper:
type: preprint
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