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Zero- and one-shot mapping#177

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alextopalova wants to merge 44 commits intomastertheislab/scarches:masterfrom alextheislab/scarches:alexCopy head branch name to clipboard

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Commits on Oct 24, 2022

• Adding a warning

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  be94c3f

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• Zero-shot and one-shot methods

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Commits on Oct 25, 2022

• New notebooks

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Commits on Oct 26, 2022

• Slight changes notebooks

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Commits on Oct 27, 2022

• Changes in notebooks and trvae

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• Changes notebook and trvae

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Commits on Oct 28, 2022

• One-shot notebook changes

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• Zero-shot notebook

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Commits on Nov 2, 2022

• Notebooks updates

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Commits on Nov 4, 2022

• Notebooks + comparison

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Commits on Nov 8, 2022

• Comparison batch and epoch change

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Commits on Nov 10, 2022

• Median values added, sampling removed

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• Addition notebook

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• Updated embed

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Commits on Nov 30, 2022

• Subsampling one and zero-shot

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Commits on Dec 1, 2022

• Slight changes comparison

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• Renaming folder

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Commits on Dec 8, 2022

• Models pushed

  

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• Changes notebook

  

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Commits on Dec 12, 2022

• Delete notebooks/reference_model directory

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• Delete notebooks/surgery_model directory

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• Slight modification comparison

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• Slight modifications comparison

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• Readable notebook

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• Reran notebook

  

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Commits on Dec 13, 2022

• Switched one and zero-shot places

  

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Commits on Jan 20, 2023

• Updated

  

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Commits on Jan 25, 2023

• Update - val_loss

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Commits on Jan 27, 2023

• Update

  

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• Delete one_shot.ipynb

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• Delete zero_shot.ipynb

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• Update

  

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• Merge branch 'alex' of https://github.com/theislab/scarches into alex

  

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• Update

  

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Commits on Feb 1, 2023

• Remove Villani

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• New queries

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Commits on Feb 7, 2023

• Updates

  

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Commits on Feb 9, 2023

• Retrained Oetjen, Kang, 10x

  

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Commits on Feb 16, 2023

• Final changes

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Commits on Mar 9, 2023

• New benchmarking, 5 reruns

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Commits on Mar 13, 2023

• Updates Oetjen notebook

  

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Commits on Mar 17, 2023

• 5 reruns + avg

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• 5 reruns

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  9d1f6a5

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Commits on Aug 9, 2023

• Fix corrupted Oetjen and Sun notebook

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