updated for version 1.3.3

theislab · Nov 5, 2018 · d5a4121 · d5a4121
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diff --git a/blood/dahlin18/dahlin18.ipynb b/blood/dahlin18/dahlin18.ipynb
@@ -14,6 +14,13 @@
     "# PAGA for hematopoiesis in mouse [(Dahlin *et al.*, 2018)](https://doi.org/10.1182/blood-2017-12-821413)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "The preprocessed data from the original publication is available from [here](https://drive.google.com/drive/folders/10B5d8hpWQdtmqpnhX-Gfx3seh4qSNInF?usp=sharing)."
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 1,

diff --git a/blood/paul15/paul15.ipynb b/blood/paul15/paul15.ipynb
diff --git a/planaria/planaria.ipynb b/planaria/planaria.ipynb
@@ -11,7 +11,9 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "This notebook reproduces the main cell map with its lineage relations, starting from the results of [Plass *et al.*, Science (2018)](10.1126/science.aaq1723)."
+    "This notebook reproduces the main cell map with its lineage relations, starting from the results of [Plass *et al.*, Science (2018)](10.1126/science.aaq1723).\n",
+    "\n",
+    "For the preprocessing and the original data, see https://github.com/rajewsky-lab/planarian_lineages."
    ]
   },
   {
@@ -1302,5 +1304,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 2
 }
diff --git a/zebrafish/zebrafish.ipynb b/zebrafish/zebrafish.ipynb
@@ -13,7 +13,7 @@
    "source": [
     "This notebook reproduces the main cell map with its lineage relations, starting from the results of [Wagner *et al.*, Science (2018)](10.1126/science.aar4362).\n",
     "\n",
-    "See this [website](https://kleintools.hms.harvard.edu/paper_websites/wagner_zebrafish_timecourse2018/mainpage.html) for an interactive exploration."
+    "See this [website](https://kleintools.hms.harvard.edu/paper_websites/wagner_zebrafish_timecourse2018/mainpage.html) for an interactive exploration. The data has been obtained from the original authors by email."
    ]
   },
   {
@@ -2071,9 +2071,7 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "source": [
     "This is equivalent the paga visualization above."
    ]