fixing linting 2

theislab · Jan 19, 2025 · 05b6dad · 05b6dad
1 parent 3d47a12
commit 05b6dad
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Showing 6 changed files with 20 additions and 20 deletions.
diff --git a/docs/developer/base.rst b/docs/developer/base.rst
@@ -32,4 +32,4 @@ Base
     solver.BaseSolver
     solver.OTSolver
     output.BaseDiscreteSolverOutput
-    output.MatrixSolverOutput
+    output.MatrixSolverOutput
diff --git a/docs/developer/index.rst b/docs/developer/index.rst
@@ -1,12 +1,12 @@
 Developer API
 #############
 
-.. module:: moscot
+.. module:: moscot.dev
 
 .. toctree::
-    :maxdepth: 3
+    :maxdepth: 2
 
     backends
     costs
     base
-    utils
+    utils
diff --git a/docs/user/generic.rst b/docs/user/generic.rst
diff --git a/docs/user/index.rst b/docs/user/index.rst
@@ -1,16 +1,15 @@
 User API
 ########
 
-.. module:: moscot
+.. module:: moscot.user
 
 Import :mod:`moscot` as::
 
     import moscot as mt
 
 .. toctree::
-    :maxdepth: 3
+    :maxdepth: 2
 
-    biological
-    generic
+    problems
     plotting
     datasets
diff --git a/docs/user/biological.rst → docs/user/problems.rst b/docs/user/biological.rst → docs/user/problems.rst
@@ -11,3 +11,14 @@ Biological Problems
     space.MappingProblem
     spatiotemporal.SpatioTemporalProblem
     cross_modality.TranslationProblem
+
+Generic Problems
+~~~~~~~~~~~~~~~~
+.. module:: moscot.generic
+.. currentmodule:: moscot.problems
+.. autosummary::
+    :toctree: genapi
+
+    generic.SinkhornProblem
+    generic.GWProblem
+    generic.FGWProblem
diff --git a/src/moscot/base/problems/compound_problem.py b/src/moscot/base/problems/compound_problem.py
@@ -492,8 +492,8 @@ def add_problem(
     def remove_problem(self, key: Tuple[K, K]) -> "BaseCompoundProblem[K, B]":
         """Remove a subproblem.
 
-        .. seealso::
-            - See :doc:`../../notebooks/examples/problems/300_adding_and_removing_problems` on how to remove subproblems.
+            - See :doc:`../../notebooks/examples/problems/300_adding_and_removing_problems` on 
+              how to remove subproblems.
 
         Parameters
         ----------