Code

Setup obs#51

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eroell merged 17 commits intomaintheislab/ehrdata:mainfrom setup_obstheislab/ehrdata:setup_obsCopy head branch name to clipboardNov 2, 2024

+1,059-201

Commits

Commits on Oct 10, 2024

• Changes to omop

  ShreyParikh07

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  c0de58c

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• further implementation

  ShreyParikh07

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  35cdd47

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• drug/device_exposure removed

  ShreyParikh07

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Oct 14, 2024

• Merge branch 'main' into setup_obs

  eroell

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  8774d79

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Commits on Oct 16, 2024

• update commit

  eroell

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  291aeba

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• Merge branch 'main' into setup_obs

  eroell

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  36be464

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• clean up nb

  eroell

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Commits on Oct 28, 2024

• dummy test omop dataset; start io tests

  eroell

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Commits on Oct 29, 2024

• proper date format cohort measurement

  eroell

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  abbb29f

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• unstable commit, to save progress

  eroell

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  4cec971

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• setup obs and variables duckdb backed, first proper minimal tests

  eroell

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  d3fca1f

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• add xarray as dependency

  eroell

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Commits on Nov 1, 2024

• update commit, unstable

  eroell

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Commits on Nov 2, 2024

• setup_var with basic functionality on units, more tests and better description

  eroell

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  a5cac1d

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• fix test illegal args, check other option for gibleed

  eroell

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  270f6bb

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• stop there w/ tests for this PR

  eroell

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