Move back

Signed-off-by: zethson <[email protected]>
theislab · Dec 3, 2024 · bf78eb1 · bf78eb1
1 parent 47a605e
commit bf78eb1
Show file tree

Hide file tree

Showing 4 changed files with 2 additions and 5 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -29,6 +29,7 @@ dependencies = [
   "awkward",
   "duckdb",
   # for debug logging (referenced from the issue template)
+  "lamin-utils",
   "session-info",
   "xarray",
 ]

diff --git a/src/ehrdata/__init__.py b/src/ehrdata/__init__.py
@@ -6,7 +6,3 @@
 __all__ = ["EHRData", "dt", "io", "pl", "pp", "tl"]
 
 __version__ = version("ehrdata")
-
-from .logging_config import configure_logging
-
-configure_logging()
diff --git a/src/ehrdata/io/omop/_omop_utils.py → src/ehrdata/_omop_utils.py b/src/ehrdata/io/omop/_omop_utils.py → src/ehrdata/_omop_utils.py
diff --git a/src/ehrdata/io/omop/omop.py b/src/ehrdata/io/omop/omop.py
@@ -12,6 +12,7 @@
 import pandas as pd
 from duckdb.duckdb import DuckDBPyConnection
 
+from ehrdata._omop_utils import get_table_catalog_dict
 from ehrdata.io.omop._check_arguments import (
     VALID_OBSERVATION_TABLES_JOIN,
     VALID_OBSERVATION_TABLES_SINGLE,
@@ -31,7 +32,6 @@
     _check_valid_observation_table,
     _check_valid_variable_data_tables,
 )
-from ehrdata.io.omop._omop_utils import get_table_catalog_dict
 from ehrdata.io.omop._queries import _time_interval_table
 
 DOWNLOAD_VERIFICATION_TAG = "download_verification_tag"