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add test data
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xinyuejohn committed Mar 18, 2024
1 parent de9b1fe commit 3dc9bcc
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Showing 32 changed files with 467,872 additions and 0 deletions.
1 change: 1 addition & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/attribute_definition.csv
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attribute_definition_id,attribute_name,attribute_description,attribute_type_concept_id,attribute_syntax
32 changes: 32 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/care_site.csv
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care_site_id,care_site_name,place_of_service_concept_id,location_id,care_site_source_value,place_of_service_source_value
7482024270134467590,Med/Surg/GYN,,1,Med/Surg/GYN,Med/Surg/GYN
6872771148744744676,Trauma SICU (TSICU),,1,Trauma SICU (TSICU),Trauma SICU (TSICU)
4662258935512879919,Unknown,,1,Unknown,Unknown
-2501038380264497908,Med/Surg,,1,Med/Surg,Med/Surg
8603684584038321926,Observation,,1,Observation,Observation
-4921759089326952807,Surgical Intensive Care Unit (SICU),,1,Surgical Intensive Care Unit (SICU),Surgical Intensive Care Unit (SICU)
-1391555203687435837,Psychiatry,,1,Psychiatry,Psychiatry
4992481836892397716,Cardiology Surgery Intermediate,,1,Cardiology Surgery Intermediate,Cardiology Surgery Intermediate
1017962119019862949,Vascular,,1,Vascular,Vascular
6301497417699858963,Medicine/Cardiology Intermediate,,1,Medicine/Cardiology Intermediate,Medicine/Cardiology Intermediate
5795622005232202614,Hematology/Oncology Intermediate,,1,Hematology/Oncology Intermediate,Hematology/Oncology Intermediate
-9001082880759516720,Surgery/Trauma,,1,Surgery/Trauma,Surgery/Trauma
8893574135069298541,Neuro Intermediate,,1,Neuro Intermediate,Neuro Intermediate
4260571064587438420,Medical Intensive Care Unit (MICU),,1,Medical Intensive Care Unit (MICU),Medical Intensive Care Unit (MICU)
-1994974909868859633,Neuro Stepdown,,1,Neuro Stepdown,Neuro Stepdown
1236875180544517908,PACU,,1,PACU,PACU
9163527066039634598,Neuro Surgical Intensive Care Unit (Neuro SICU),,1,Neuro Surgical Intensive Care Unit (Neuro SICU),Neuro Surgical Intensive Care Unit (Neuro SICU)
2622982412586685824,Cardiac Surgery,,1,Cardiac Surgery,Cardiac Surgery
7883369686195988084,Medical/Surgical Intensive Care Unit (MICU/SICU),,1,Medical/Surgical Intensive Care Unit (MICU/SICU),Medical/Surgical Intensive Care Unit (MICU/SICU)
-4595469263819475121,Cardiac Vascular Intensive Care Unit (CVICU),,1,Cardiac Vascular Intensive Care Unit (CVICU),Cardiac Vascular Intensive Care Unit (CVICU)
-4692107866841310865,Transplant,,1,Transplant,Transplant
2567623729868189377,Cardiology,,1,Cardiology,Cardiology
-1687181949124712268,Coronary Care Unit (CCU),,1,Coronary Care Unit (CCU),Coronary Care Unit (CCU)
-6388176138378808864,Neurology,,1,Neurology,Neurology
-1961798000198430351,Hematology/Oncology,,1,Hematology/Oncology,Hematology/Oncology
-428473802128370025,Med/Surg/Trauma,,1,Med/Surg/Trauma,Med/Surg/Trauma
6624301826366063357,Surgery/Vascular/Intermediate,,1,Surgery/Vascular/Intermediate,Surgery/Vascular/Intermediate
3867689376711056927,Medicine/Cardiology,581383,1,Medicine/Cardiology,Medicine/Cardiology
-539367094141958574,Medicine,38004515,1,Medicine,Medicine
-3633440072147213200,Emergency Department Observation,8870,1,Emergency Department Observation,Emergency Department Observation
6888076371289519343,Emergency Department,8870,1,Emergency Department,Emergency Department
2 changes: 2 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/cdm_source.csv
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cdm_source_name,cdm_source_abbreviation,cdm_holder,source_description,source_documentation_reference,cdm_etl_reference,source_release_date,cdm_release_date,cdm_version,vocabulary_version
MIMIC IV,mimiciv,PhysioNet,"MIMIC-IV is a publicly available database of patients admitted to the Beth Israel Deaconess Medical Center in Boston, MA, USA.",https://mimic-iv.mit.edu/docs/,https://github.com/OHDSI/MIMIC/,2020-09-01,2021-05-03,5.3.1,v5.0 10-SEP-20
1 change: 1 addition & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/cohort.csv
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cohort_definition_id,subject_id,cohort_start_date,cohort_end_date
1 change: 1 addition & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/cohort_attribute.csv
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cohort_definition_id,subject_id,cohort_start_date,cohort_end_date,attribute_definition_id,value_as_number,value_as_concept_id
1 change: 1 addition & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/cohort_definition.csv
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cohort_definition_id,cohort_definition_name,cohort_definition_description,definition_type_concept_id,cohort_definition_syntax,subject_concept_id,cohort_initiation_date
3,886 changes: 3,886 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/concept.csv

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7,717 changes: 7,717 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/concept_relationship.csv

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3,772 changes: 3,772 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/condition_era.csv

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16,442 changes: 16,442 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/condition_occurrence.csv

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1 change: 1 addition & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/cost.csv
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cost_id,cost_event_id,cost_domain_id,cost_type_concept_id,currency_concept_id,total_charge,total_cost,total_paid,paid_by_payer,paid_by_patient,paid_patient_copay,paid_patient_coinsurance,paid_patient_deductible,paid_by_primary,paid_ingredient_cost,paid_dispensing_fee,payer_plan_period_id,amount_allowed,revenue_code_concept_id,revenue_code_source_value,drg_concept_id,drg_source_value
16 changes: 16 additions & 0 deletions tests/mimic-iv-demo-OMOP-CDM-data/death.csv
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person_id,death_date,death_datetime,death_type_concept_id,cause_concept_id,cause_source_value,cause_source_concept_id
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-2500070523286875699,2201-07-13,2201-07-13 23:27:00,32817,0,,0
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