Fix versions used in workflow (#62)

theislab · Dec 28, 2023 · 912f117 · 912f117
1 parent dc47b82
commit 912f117
Showing 1 changed file with 10 additions and 10 deletions.
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -54,9 +54,9 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - { os: ubuntu-latest, r: 'release', bioc: '3.14', cont: "bioconductor/bioconductor_docker:RELEASE_3_14", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
-          - { os: macOS-latest, r: 'release', bioc: '3.14' }
-          - { os: windows-latest, r: 'release', bioc: '3.14' }
+          - { os: ubuntu-latest,  r: '4.2', bioc: '3.15', bioc_release: RELEASE_3_15, cont: "bioconductor/bioconductor_docker:RELEASE_3_15", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
+          - { os: macOS-latest,   r: '4.2', bioc: '3.15', bioc_release: RELEASE_3_15 }
+          - { os: windows-latest, r: '4.2', bioc: '3.15', bioc_release: RELEASE_3_15 }
           ## Check https://github.com/r-lib/actions/tree/master/examples
           ## for examples using the http-user-agent
     env:
@@ -86,15 +86,15 @@ jobs:
       ## R is already included in the Bioconductor docker images
       - name: Setup R from r-lib
         if: runner.os != 'Linux'
-        uses: r-lib/actions/setup-r@master
+        uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
 
       ## pandoc is already included in the Bioconductor docker images
       - name: Setup pandoc from r-lib
         if: runner.os != 'Linux'
-        uses: r-lib/actions/setup-pandoc@master
+        uses: r-lib/actions/setup-pandoc@v2
 
       - name: Query dependencies
         run: |
@@ -107,16 +107,16 @@ jobs:
         uses: actions/cache@v2
         with:
           path: ${{ env.R_LIBS_USER }}
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-${{ matrix.config.bioc_release }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-${{ matrix.config.bioc_release }}-r-${{ matrix.config.r }}-
 
       - name: Cache R packages on Linux
         if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' "
         uses: actions/cache@v2
         with:
           path: /home/runner/work/_temp/Library
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-${{ matrix.config.bioc_release }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-${{ matrix.config.bioc_release }}-r-${{ matrix.config.r }}-
 
       - name: Install Linux system dependencies
         if: runner.os == 'Linux'
@@ -293,7 +293,7 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@master
         with:
-          name: ${{ runner.os }}-biocversion-RELEASE_3_14-r-4.1-results
+          name: ${{ runner.os }}-biocversion-${{ matrix.config.bioc_release }}-r-${{ matrix.config.r }}-results
           path: check
 
       - uses: docker/build-push-action@v1