update

DESCRIPTION

@@ -121,4 +121,4 @@ Collate:
     'projection-dist.r'
     'rankcor.r'
     'sigmas-plotting.r'
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.2

R/destiny-package.r

@@ -5,10 +5,9 @@
 #' @examples
 #' demo(destiny, ask = FALSE)
 #' 
-#' @docType package
 #' @name destiny
 #' 
 ## Make sure Rcpp and RcppEigen are loaded
 #' @importFrom Rcpp evalCpp
 #' @importFrom RcppEigen RcppEigen.package.skeleton
-NULL
+"_PACKAGE"

vignettes/Gene-Relevance.Rmd

@@ -127,9 +127,9 @@ gms[-1] %>% map(~ .$ids[1:10]) %>% purrr::reduce(intersect) %>% cat(sep = ' ')
 ```
 
 ```{r}
-httr::GET('https://www.uniprot.org/uniprot/', query = list(
+httr::GET('https://rest.uniprot.org/uniprotkb/search', query = list(
     columns = 'id,genes,comment(TISSUE SPECIFICITY)',
-    format = 'tab',
-    query = rowData(allen)$Uniprot[gms$cosine$ids[1:6]] %>% unlist() %>% paste(collapse = ' or ')
-)) %>% httr::content(type = 'text/tab-separated-values', encoding = 'utf-8', )
+    format = 'tsv',
+    query = rowData(allen)$Uniprot[gms$cosine$ids[1:6]] %>% unlist() %>% paste(collapse = ' OR ')
+)) %>% httr::content(type = 'text/tab-separated-values', encoding = 'utf-8')
 ```