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@sage-wright sage-wright released this 06 Jun 16:17
· 25 commits to main since this release
v1.4.4.8
c6fdf82

tbp-parser v1.4.4.8

stable

This release can be used for tNGS TB sequencing analysis; WGS analysis has not yet been validated.

This release makes the following adjustment to lineage determination for the LIMS report for tNGS only

  • The number of loci on the coverage report (there are 17, 2 for rpoB and 2 for mmpR5/Rv0678) that have at least 90% breadth of coverage in the "Coverage_Breadth_reportableQC_region" column will be counted (no change from v1.4.4.7)
  • That number will be divided by the number of loci in the coverage report (of which there are 17) to get a percentage (no change from v1.4.4.7)
  • MTBC ID will be determined if that percentage is greater than or equal to 70%. This means that 5 loci can be below 90% before MTBC ID cannot be detected.
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