Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| pull_request: | |
| branches: | |
| - '**' | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} # Does not appear to have Java 32-bit, hence the --no-multiarch | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GH_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| CDM5_ORACLE_CDM_SCHEMA: ${{ secrets.CDM5_ORACLE_CDM_SCHEMA }} | |
| CDM5_ORACLE_OHDSI_SCHEMA: ${{ secrets.CDM5_ORACLE_OHDSI_SCHEMA }} | |
| CDM5_ORACLE_PASSWORD: ${{ secrets.CDM5_ORACLE_PASSWORD }} | |
| CDM5_ORACLE_SERVER: ${{ secrets.CDM5_ORACLE_SERVER }} | |
| CDM5_ORACLE_USER: ${{ secrets.CDM5_ORACLE_USER }} | |
| CDM5_POSTGRESQL_CDM_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_CDM_SCHEMA }} | |
| CDM5_POSTGRESQL_OHDSI_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_OHDSI_SCHEMA }} | |
| CDM5_POSTGRESQL_PASSWORD: ${{ secrets.CDM5_POSTGRESQL_PASSWORD }} | |
| CDM5_POSTGRESQL_SERVER: ${{ secrets.CDM5_POSTGRESQL_SERVER }} | |
| CDM5_POSTGRESQL_USER: ${{ secrets.CDM5_POSTGRESQL_USER }} | |
| CDM5_SQL_SERVER_CDM_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_CDM_SCHEMA }} | |
| CDM5_SQL_SERVER_OHDSI_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_OHDSI_SCHEMA }} | |
| CDM5_SQL_SERVER_PASSWORD: ${{ secrets.CDM5_SQL_SERVER_PASSWORD }} | |
| CDM5_SQL_SERVER_SERVER: ${{ secrets.CDM5_SQL_SERVER_SERVER }} | |
| CDM5_SQL_SERVER_USER: ${{ secrets.CDM5_SQL_SERVER_USER }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install libssh | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libssh-dev | |
| - name: Install dependencies | |
| run: | | |
| install.packages("curl") | |
| remotes::install_deps(dependencies = TRUE, INSTALL_opts=c("--no-multiarch")) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Install covr | |
| if: runner.os == 'macOS' | |
| run: | | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| - name: Remove check folder if exists | |
| if: runner.os == 'macOS' | |
| run: unlink("check", recursive = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Upload source package | |
| if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/main' | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: package_tarball | |
| path: check/*.tar.gz | |
| - name: Test coverage | |
| if: runner.os == 'macOS' | |
| run: covr::codecov() | |
| shell: Rscript {0} | |
| Release: | |
| needs: R-CMD-Check | |
| runs-on: macOS-latest | |
| env: | |
| GH_TOKEN: ${{ secrets.GH_TOKEN }} | |
| if: ${{ github.event_name != 'pull_request' && github.ref == 'refs/heads/main' }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check if version has increased | |
| run: | | |
| echo "new_version="$(perl compare_versions --tag) >> $GITHUB_ENV | |
| - name: Display new version number | |
| if: ${{ env.new_version != '' }} | |
| run: | | |
| echo "${{ env.new_version }}" | |
| - name: Create release | |
| if: ${{ env.new_version != '' }} | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | |
| with: | |
| tag_name: ${{ env.new_version }} | |
| release_name: Release ${{ env.new_version }} | |
| body: | | |
| See NEWS.md for release notes. | |
| draft: false | |
| prerelease: false | |
| - uses: r-lib/actions/setup-r@v2 | |
| if: ${{ env.new_version != '' }} | |
| - name: Install drat | |
| if: ${{ env.new_version != '' }} | |
| run: | | |
| install.packages('drat') | |
| shell: Rscript {0} | |
| - name: Remove any tarballs that already exists | |
| if: ${{ env.new_version != '' }} | |
| run: | | |
| rm -f *.tar.gz | |
| - name: Download package tarball | |
| if: ${{ env.new_version != '' }} | |
| uses: actions/[email protected] | |
| with: | |
| name: package_tarball | |
| - name: Push to drat | |
| if: ${{ env.new_version != '' }} | |
| run: | | |
| bash deploy.sh | |
| - name: Push to BroadSea | |
| if: ${{ env.new_version != '' }} | |
| run: | | |
| curl --data "build=true" -X POST https://registry.hub.docker.com/u/ohdsi/broadsea-methodslibrary/trigger/f0b51cec-4027-4781-9383-4b38b42dd4f5/ |