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Perl to r #189

Merged
merged 25 commits into from
Jun 28, 2024
Merged

Perl to r #189

merged 25 commits into from
Jun 28, 2024

Commits on Mar 25, 2024

  1. Add tests for current read_seq_len behavior

    @iimog
    iimog committed Mar 25, 2024
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Commits on Jun 6, 2024

  1. Re-implement read_seq_len in R

    @iimog
    iimog committed Jun 6, 2024
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  2. Ignore vscode dir

    @iimog
    iimog committed Jun 6, 2024
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  3. Export S3 methods 

    This is necessary from roxygen 7.3, see https://www.tidyverse.org/blog/2024/01/roxygen2-7-3-0/
and details in https://roxygen2.r-lib.org/articles/namespace.html#s3
    @iimog
    iimog committed Jun 6, 2024
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  4. Re-generate man

    @iimog
    iimog committed Jun 6, 2024
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  5. Ignore vscode in R build

    @iimog
    iimog committed Jun 6, 2024
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  6. S3 generic/method consistency

    @iimog
    iimog committed Jun 6, 2024
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Commits on Jun 7, 2024

  1. Fix warnings about usage sections

    @iimog
    iimog committed Jun 7, 2024
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  2. Fix note about ellipsis not being imported

    @iimog
    iimog committed Jun 7, 2024
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  3. Update rhub action

    @iimog
    iimog committed Jun 7, 2024
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Commits on Jun 13, 2024

  1. Remove rtracklayer from Suggests

    @iimog
    iimog committed Jun 13, 2024
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Commits on Jun 19, 2024

  1. Fix package anchor for links in aesthetics

    @iimog
    iimog committed Jun 19, 2024
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  2. Further decrease image size to fit CRAN size constraint

    @iimog
    iimog committed Jun 19, 2024
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  3. Compress ext gorg.gff file

    @iimog
    iimog committed Jun 19, 2024
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  4. Move advanced flip examples to separate vignette

    @iimog
    iimog committed Jun 19, 2024
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  5. Ignore pkgdown cache

    @iimog
    iimog committed Jun 19, 2024
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Commits on Jun 21, 2024

  1. Add packages into quotes, fix spelling

    @iimog
    iimog committed Jun 21, 2024
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Commits on Jun 25, 2024

  1. Wrap error producing code in try rather than \dontrun

    @iimog
    iimog committed Jun 25, 2024
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  2. Fix write_gff3 and activate example with tempfile

    @iimog
    iimog committed Jun 25, 2024
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  3. Make remote read_feats example donttest instead of dontrun

    @iimog
    iimog committed Jun 25, 2024
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  4. Remove quote for geom 

    quotes are for package names only
    @iimog
    iimog committed Jun 25, 2024
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  5. Fix missing \value tags in Rd files 

    Instances found using checkhelper::find_missing_tags()
Automatic formatting applied
    @iimog
    iimog committed Jun 25, 2024
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  6. Apply auto-formatting

    @iimog
    iimog committed Jun 25, 2024
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Commits on Jun 27, 2024

  1. Fix missing \value Rd-tags

    @iimog
    iimog committed Jun 27, 2024
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  2. Simplify expression

    @iimog
    iimog committed Jun 27, 2024
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