-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
61c18a4
commit d2632c8
Showing
11 changed files
with
278 additions
and
111 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| # R-universe API | ||
| uni_info <- function(what = c("Package", "Title", "Version", "Description")) { | ||
| api <- httr2::request("https://tesselle.r-universe.dev") | ||
| req <- httr2::req_url_path(api, "/api/packages/") | ||
| resp <- httr2::req_perform(req) | ||
| json <- httr2::resp_body_json(resp) | ||
|
|
||
| pkg <- lapply(X = json, `[`, what) | ||
| pkg <- lapply(pkg, as.data.frame) | ||
| pkg <- do.call(rbind, pkg) | ||
| pkg | ||
| } | ||
|
|
||
| # GitHub API | ||
| gh_infos <- function(what = c("stargazers_count", "forks", "open_issues")) { | ||
| ## Repo infos | ||
| user_repo <- gh::gh( | ||
| endpoint = "/search/repositories", | ||
| q="user:tesselle topic:r-package", | ||
| .limit = Inf | ||
| ) | ||
| items <- user_repo$items | ||
| if (length(items) < 1) return(NULL) | ||
| if (length(items) == 1 && items == "") return(NULL) | ||
|
|
||
| items <- lapply(items, `[`, c("name", what)) | ||
| items <- lapply(items, as.data.frame) | ||
| items <- do.call(rbind, items) | ||
| items | ||
| } | ||
|
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,90 +1,179 @@ | ||
| - title: tabula | ||
| subtitle: Analysis and Visualization of Archaeological Count Data | ||
| categories: | ||
| - count data | ||
| description: | | ||
| 'tabula' provides several tests and measures of diversity: heterogeneity and | ||
| evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction | ||
| (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, | ||
| etc.). The package make it easy to visualize count data and statistical | ||
| thresholds: rank vs. abundance plots, heatmaps, Ford and Bertin diagrams. | ||
| - title: nexus | ||
| subtitle: Sourcing Archaeological Materials by Chemical Composition | ||
| categories: | ||
| - compositional data | ||
| description: | | ||
| 'nexus' allows the exploration and analysis of compositional data in the | ||
| framework of Aitchison (1986). It provides tools for chemical | ||
| fingerprinting and source tracking of ancient materials. | ||
| - title: kairos | ||
| subtitle: Analysis of Chronological Patterns from Archaeological Count Data | ||
| categories: | ||
| - count data | ||
| - chronological data | ||
| description: | | ||
| 'kairos' includes functions for chronological modeling and dating of | ||
| archaeological assemblages from count data. It provides methods for | ||
| matrix seriation. It also allows to compute time point estimates and | ||
| density estimates of the occupation and duration of an archaeological | ||
| - package: khroma | ||
| title: Colour Schemes for Scientific Data Visualization | ||
| version: 1.12.0 | ||
| description: |- | ||
| Color schemes ready for each type of data (qualitative, | ||
| diverging or sequential), with colors that are distinct for all | ||
| people, including color-blind readers. This package provides an | ||
| implementation of Paul Tol (2018) and Fabio Crameri (2018) | ||
| <doi:10.5194/gmd-11-2541-2018> color schemes for use with | ||
| 'graphics' or 'ggplot2'. It provides tools to simulate | ||
| color-blindness and to test how well the colors of any palette | ||
| are identifiable. Several scientific thematic schemes (geologic | ||
| timescale, land cover, FAO soils, etc.) are also implemented. | ||
| stargazers_count: 193 | ||
| forks: 7 | ||
| open_issues: 1 | ||
| - package: tabula | ||
| title: Analysis and Visualization of Archaeological Count Data | ||
| version: 3.1.0 | ||
| description: |- | ||
| An easy way to examine archaeological count data. This | ||
| package provides several tests and measures of diversity: | ||
| heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), | ||
| richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), | ||
| turnover and similarity (Brainerd-Robinson, etc.). It allows to | ||
| easily visualize count data and statistical thresholds: rank vs | ||
| abundance plots, heatmaps, Ford (1962) and Bertin (1977) | ||
| diagrams, etc. | ||
| stargazers_count: 34 | ||
| forks: 5 | ||
| open_issues: 0 | ||
| - package: kairos | ||
| title: |- | ||
| Analysis of Chronological Patterns from Archaeological Count | ||
| Data | ||
| version: 2.1.0 | ||
| description: |- | ||
| A toolkit for absolute and relative dating and analysis of | ||
| chronological patterns. This package includes functions for | ||
| chronological modeling and dating of archaeological assemblages | ||
| from count data. It provides methods for matrix seriation. It | ||
| also allows to compute time point estimates and density | ||
| estimates of the occupation and duration of an archaeological | ||
| site. | ||
| - title: aion | ||
| subtitle: Archaeological Time Series | ||
| categories: | ||
| - chronological data | ||
| description: | | ||
| 'aion' provides a system of classes and methods to represent and work with | ||
| archaeological time series. Dates are represented as rata die and can | ||
| be converted to (virtualy) any calendar defined by Reingold (2018). | ||
| - title: dimensio | ||
| subtitle: Multivariate Data Analysis | ||
| categories: | ||
| - multivariate data analysis | ||
| description: | | ||
| Simple Principal Components Analysis (PCA) and Correspondence Analysis | ||
| (CA) based on the Singular Value Decomposition (SVD). 'dimensio' | ||
| provides S4 classes and methods to compute, extract, summarize and | ||
| visualize results of multivariate data analysis. It also includes | ||
| methods for partial bootstrap validation described in Greenacre (1984) | ||
| and Lebart (2006). | ||
| - title: isopleuros | ||
| subtitle: Ternary Plots | ||
| categories: | ||
| - data visualization | ||
| description: | | ||
| 'isopleuros' allows to create ternary plot using 'graphics'. It provides | ||
| functions to display the data in the ternary space, to add or tune graphical | ||
| elements and to display statistical summaries. It also includes common | ||
| ternary diagrams useful for the archaeologist (e.g. soil texture charts, | ||
| ceramic phase diagram). | ||
| - title: khroma | ||
| subtitle: Colour Schemes for Scientific Data Visualization | ||
| categories: | ||
| - data visualization | ||
| description: | | ||
| Colour schemes ready for each type of data (qualitative, diverging or | ||
| sequential), with colours that are distinct for all people, including | ||
| colour-blind readers. 'khroma' provides an implementation of Paul | ||
| Tol (2018) and Fabio Crameri (2018) colour schemes for use with | ||
| 'graphics' or 'ggplot2'. It provides tools to simulate colour-blindness | ||
| and to test how well the colours of any palette are identifiable. | ||
| Several scientific thematic schemes (geologic timescale, land cover, | ||
| FAO soils, etc.) are also implemented. | ||
| - title: alkahest | ||
| subtitle: Pre-Processing XY Data from Experimental Methods | ||
| categories: | ||
| - tools | ||
| description: | | ||
| 'alkahest' is a lightweight, dependency-free toolbox for pre-processing XY | ||
| data from experimental methods (i.e. any signal that can be measured along a | ||
| continuous variable). This package provides methods for baseline | ||
| estimation and correction, smoothing, normalization, integration and | ||
| peaks detection. | ||
| - title: folio | ||
| subtitle: Datasets for Teaching Archaeology and Paleontology | ||
| categories: | ||
| - datasets | ||
| description: | | ||
| 'folio' provides several types of data related to broad topics (cultural | ||
| evolution, radiocarbon dating, paleoenvironments, etc.), which can be used | ||
| to illustrate statistical methods in the classroom (multivariate data | ||
| analysis, compositional data analysis, diversity measurement, etc.). | ||
| stargazers_count: 14 | ||
| forks: 1 | ||
| open_issues: 6 | ||
| - package: folio | ||
| title: Datasets for Teaching Archaeology and Paleontology | ||
| version: 1.4.0 | ||
| description: |- | ||
| Datasets for teaching quantitative approaches and modeling | ||
| in archaeology and paleontology. This package provides several | ||
| types of data related to broad topics (cultural evolution, | ||
| radiocarbon dating, paleoenvironments, etc.), which can be used | ||
| to illustrate statistical methods in the classroom | ||
| (multivariate data analysis, compositional data analysis, | ||
| diversity measurement, etc.). | ||
| stargazers_count: 11 | ||
| forks: 0 | ||
| open_issues: 1 | ||
| - package: dimensio | ||
| title: Multivariate Data Analysis | ||
| version: 0.7.0 | ||
| description: |- | ||
| Simple Principal Components Analysis (PCA) and (Multiple) | ||
| Correspondence Analysis (CA) based on the Singular Value | ||
| Decomposition (SVD). This package provides S4 classes and | ||
| methods to compute, extract, summarize and visualize results of | ||
| multivariate data analysis. It also includes methods for | ||
| partial bootstrap validation described in Greenacre (1984, | ||
| ISBN: 978-0-12-299050-2) and Lebart et al. (2006, ISBN: | ||
| 978-2-10-049616-7). | ||
| stargazers_count: 10 | ||
| forks: 0 | ||
| open_issues: 1 | ||
| - package: aion | ||
| title: Archaeological Time Series | ||
| version: 1.0.3 | ||
| description: |- | ||
| A toolkit for archaeological time series. This package | ||
| provides a system of classes and methods to represent and work | ||
| with archaeological time series. Dates are represented as "rata | ||
| die" and can be converted to (virtually) any calendar defined | ||
| by Reingold and Dershowitz (2018) <doi:10.1017/9781107415058>. | ||
| This packages offers a simple API that can be used by other | ||
| specialized packages. | ||
| stargazers_count: 10 | ||
| forks: 0 | ||
| open_issues: 1 | ||
| - package: arkhe | ||
| title: Tools for Cleaning Rectangular Data | ||
| version: 1.6.0 | ||
| description: |- | ||
| A dependency-free collection of simple functions for | ||
| cleaning rectangular data. This package allows to detect, count | ||
| and replace values or discard rows/columns using a predicate | ||
| function. In addition, it provides tools to check conditions | ||
| and return informative error messages. | ||
| stargazers_count: 10 | ||
| forks: 0 | ||
| open_issues: 0 | ||
| - package: isopleuros | ||
| title: Ternary Plots | ||
| version: 1.2.0 | ||
| description: |- | ||
| Ternary plots made simple. This package allows to create | ||
| ternary plots using 'graphics'. It provides functions to | ||
| display the data in the ternary space, to add or tune graphical | ||
| elements and to display statistical summaries. It also includes | ||
| common ternary diagrams which are useful for the archaeologist | ||
| (e.g. soil texture charts, ceramic phase diagram). | ||
| stargazers_count: 8 | ||
| forks: 1 | ||
| open_issues: 0 | ||
| - package: tesselle | ||
| title: Easily Install and Load 'tesselle' Packages | ||
| version: 1.4.0 | ||
| description: |- | ||
| Easy install and load key packages from the 'tesselle' | ||
| suite in a single step. The 'tesselle' suite is a collection of | ||
| packages for research and teaching in archaeology. These | ||
| packages focus on quantitative analysis methods developed for | ||
| archaeology. The 'tesselle' packages are designed to work | ||
| seamlessly together and to complement general-purpose and other | ||
| specialized statistical packages. These packages can be used to | ||
| explore and analyze common data types in archaeology: count | ||
| data, compositional data and chronological data. Learn more | ||
| about 'tesselle' at <https://www.tesselle.org>. | ||
| stargazers_count: 6 | ||
| forks: 0 | ||
| open_issues: 0 | ||
| - package: nexus | ||
| title: Sourcing Archaeological Materials by Chemical Composition | ||
| version: 0.2.0 | ||
| description: |- | ||
| Exploration and analysis of compositional data in the | ||
| framework of Aitchison (1986, ISBN: 978-94-010-8324-9). This | ||
| package provides tools for chemical fingerprinting and source | ||
| tracking of ancient materials. | ||
| stargazers_count: 4 | ||
| forks: 0 | ||
| open_issues: 2 | ||
| - package: alkahest | ||
| title: Pre-Processing XY Data from Experimental Methods | ||
| version: 1.1.1 | ||
| description: |- | ||
| A lightweight, dependency-free toolbox for pre-processing | ||
| XY data from experimental methods (i.e. any signal that can be | ||
| measured along a continuous variable). This package provides | ||
| methods for baseline estimation and correction, smoothing, | ||
| normalization, integration and peaks detection. Baseline | ||
| correction methods includes polynomial fitting as described in | ||
| Lieber and Mahadevan-Jansen (2003) | ||
| <doi:10.1366/000370203322554518>, Rolling Ball algorithm after | ||
| Kneen and Annegarn (1996) <doi:10.1016/0168-583X(95)00908-6>, | ||
| SNIP algorithm after Ryan et al. (1988) | ||
| <doi:10.1016/0168-583X(88)90063-8>, 4S Peak Filling after | ||
| Liland (2015) <doi:10.1016/j.mex.2015.02.009> and more. | ||
| stargazers_count: 4 | ||
| forks: 0 | ||
| open_issues: 0 | ||
| - package: ananke | ||
| title: Quantitative Chronology in Archaeology | ||
| version: 0.0.0.9000 | ||
| description: What the package does (one paragraph). | ||
| stargazers_count: 0 | ||
| forks: 0 | ||
| open_issues: 0 | ||
| - package: kinesis | ||
| title: '''Shiny'' Applications for the ''tesselle'' Packages' | ||
| version: 0.0.0.9003 | ||
| description: |- | ||
| A collection of 'shiny' applications for the 'tesselle' | ||
| packages. | ||
| stargazers_count: 0 | ||
| forks: 0 | ||
| open_issues: 1 | ||
|
|
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Oops, something went wrong.