add linelist exposure to atom data and reader, built on current (#2428)

* add linelist exposure to atom data and reader, built on current

* add josh to mailmap

.mailmap

@@ -104,6 +104,8 @@ John Reichenbach <[email protected]>
 Jordi Eguren <[email protected]>
 Jordi Eguren <[email protected]> jordi5 <[email protected]>
 
+Josh Shields <[email protected]>
+
 Karan Desai <[email protected]>
 Karan Desai <[email protected]> karandesai-96 <[email protected]>
 

tardis/io/atom_data/base.py

@@ -138,6 +138,7 @@ class AtomData(object):
         "photoionization_data",
         "yg_data",
         "two_photon_data",
+        "linelist",
     ]
 
     # List of tuples of the related dataframes.
@@ -165,7 +166,6 @@ def from_hdf(cls, fname=None):
         fname = resolve_atom_data_fname(fname)
 
         with pd.HDFStore(fname, "r") as store:
-
             for name in cls.hdf_names:
                 try:
                     dataframes[name] = store.select(name)
@@ -182,7 +182,6 @@ def from_hdf(cls, fname=None):
                     # Checks for various collisional data from Carsus files
                     if "collisions_data" in store:
                         try:
-
                             dataframes["collision_data_temperatures"] = store[
                                 "collisions_metadata"
                             ].temperatures
@@ -211,6 +210,8 @@ def from_hdf(cls, fname=None):
                     raise ValueError(
                         f"Current carsus version, {carsus_version}, is not supported."
                     )
+            if "linelist" in store:
+                dataframes["linelist"] = store["linelist"]
 
             atom_data = cls(**dataframes)
 
@@ -273,8 +274,8 @@ def __init__(
         photoionization_data=None,
         yg_data=None,
         two_photon_data=None,
+        linelist=None,
     ):
-
         self.prepared = False
 
         # CONVERT VALUES TO CGS UNITS
@@ -333,6 +334,9 @@ def __init__(
 
         self.two_photon_data = two_photon_data
 
+        if linelist is not None:
+            self.linelist = linelist
+
         self._check_related()
 
         self.symbol2atomic_number = OrderedDict(
@@ -426,7 +430,6 @@ def prepare_atom_data(
             self.macro_atom_data_all is not None
             and not line_interaction_type == "scatter"
         ):
-
             self.macro_atom_data = self.macro_atom_data_all.loc[
                 self.macro_atom_data_all["atomic_number"].isin(
                     self.selected_atomic_numbers