Use current tardis (#142)

* Use current version of stardis in stardis conda environment

* Use current tardis in stardis_cuda environment

* Render unified lockfile format for stardis environment

* Render unified lockfile for stardis-cuda environment

* Render platform-specific lockfiles

* Change installation docs to use current version of tardis

* Use current version of stardis in github unit tests

* Change location of restructured tardis libraries

* Use current versions of python packages in stardis conda environment

* Use current versions of python packages in stardis cuda environment

* Render unified lockfile for stardis environment with current versions of Python packages

* Render unified lockfile for stardis-cuda environment with current versions of Python packages

* Render platform-specific lockfiles with current versions of python packages

* Unpin `tardis` version to use the current version for `build-docs.yml`

* Remove pinned version of `tardis` in benchmarks, replaced by current version

* Change location of restructured `tardis` libraries in `benchmarks/run_stardis.py`

* Change import to reflect relocation of tardis `config_reader`

.github/workflows/benchmarks.yml

@@ -1,7 +1,7 @@
 name: benchmarks
 
 env:
-  TARDIS_VER: release-2023.06.18
+  TARDIS_VER: master # release-2023.06.18
 
 on:
   push:
@@ -79,7 +79,7 @@ jobs:
 
       - name: Add TARDIS install command to asv config file
         run: |
-          TARDIS_INSTALL_CMD="pip install git+https://github.com/tardis-sn/tardis.git@${{ env.TARDIS_VER }}"
+          TARDIS_INSTALL_CMD="pip install git+https://github.com/tardis-sn/tardis.git" # @${{ env.TARDIS_VER }}"
           cat <<< $(jq '.build_command |= [$TARDIS_INSTALL_CMD] + .' --arg TARDIS_INSTALL_CMD "${TARDIS_INSTALL_CMD}" asv.conf.json) > asv.conf.json
 
       - name: Run benchmarks for last 5 commits if not PR

.github/workflows/build-docs.yml

@@ -46,7 +46,7 @@ jobs:
         id: install-tardis
         # shell: bash -l {0}
         run: |
-          pip install git+https://github.com/tardis-sn/[email protected]
+          pip install git+https://github.com/tardis-sn/tardis.git # @release-2023.04.16
         
       - name: Install STARDIS
         id: install-stardis

.github/workflows/tests.yml

@@ -65,7 +65,7 @@ jobs:
         id: install-tardis
         # shell: bash -l {0}
         run: |
-          pip install git+https://github.com/tardis-sn/tardis.git@release-2023.04.16
+          pip install git+https://github.com/tardis-sn/tardis.git
           
       - name: Install STARDIS
         id: install-stardis

benchmarks/run_stardis.py

@@ -6,8 +6,8 @@
 from astropy import units as u
 
 from tardis.io.atom_data import AtomData
-from tardis.io.config_validator import validate_yaml
-from tardis.io.config_reader import Configuration
+from tardis.io.configuration.config_validator import validate_yaml
+from tardis.io.configuration.config_reader import Configuration
 
 from stardis.io.model.marcs import read_marcs_model
 from stardis.plasma import create_stellar_plasma