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WIP: Add jcvi.graphics.ribbon module#733

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tanghaibao merged 50 commits intotanghaibao:maintanghaibao/jcvi:mainfrom Adamtaranto:devAdamtaranto/jcvi:devCopy head branch name to clipboardDec 26, 2024

+1,290-7

Commits

Commits on Sep 18, 2019

• Initialise dev branch

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Commits on Sep 19, 2019

• Merge branch 'master' into dev

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• Merge branch 'master' into dev

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Commits on Sep 20, 2019

• Do not plot blocks/ribbons from lines beginning with *

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Commits on Sep 25, 2019

• Add opt noline to suppress ribbon outlines

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Commits on Dec 11, 2019

• Merge branch 'master' into dev

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Commits on Dec 12, 2019

• Port style option for straight ribbons + various formating fixes

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Commits on Feb 19, 2020

• Port xrange to Py3 and fix default strand colour selection

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Commits on Feb 21, 2020

• Merge branch 'master' into dev

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Commits on Jun 30, 2021

• Merge branch 'master' into dev

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Commits on Jul 1, 2021

• Migrate Ribbon scripts to py3

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Commits on Jul 5, 2021

• Beta support for PAF input

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• pep8 fixes

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Commits on Jul 6, 2021

• Merge branch 'master' into dev

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Commits on Jul 13, 2021

• Merge branch 'master' into dev

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Commits on Feb 15, 2023

• Black formatting

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• Merge branch 'master' into dev

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Commits on Feb 17, 2023

• add ribbon test case files

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• log matplotlib backend

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• add logging to ribbon

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• Merge branch 'dev' of github.com:Adamtaranto/jcvi into dev

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• Merge branch 'master' into dev

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Commits on Feb 19, 2023

• Do not try to set usetex=False or resave

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• Replace check_call with check_out in sh()

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• Collect stderr msgs from lastal for use in

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• Log suggestion to use --notex if savefig fails

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• Merge branch 'master' into dev

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Commits on Feb 20, 2023

• Add cleanup empty pdf before exit if savefig fails

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• Merge branch 'main' of https://github.com/tanghaibao/jcvi

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• Merge branch 'master' into dev

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• Reorder imports

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• Black formatting

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Commits on Feb 21, 2023

• Add logging to clarify why latex use is

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• Add logging to clarify why latex is

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• Merge branch 'master' into dev

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Commits on Feb 23, 2023

• Merge branch 'main' of https://github.com/tanghaibao/jcvi

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Commits on Nov 14, 2024

• Merge remote-tracking branch 'upstream/main'

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• Merge branch 'main' into dev

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Commits on Dec 25, 2024

• Merge branch 'tanghaibao:main' into dev

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Commits on Dec 26, 2024

• Merge branch 'tanghaibao:main' into dev

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• rm trmp folder from tracking

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• ignore dev files

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• Use logger + minor pylance fixes

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• sort imports

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• Try checkout PR head instead of SHA

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• Try PAT token

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• disable black commits for forks

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• add issues write permission

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• test checkout fixes

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• Disable for forks

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