SLEAP v1.3.1

After the massive 1.3.0 release, SLEAP 1.3.1 underwent a much needed dependency and build update. SLEAP 1.3.1 has conda packages for Mac OS X and Apple Silicon 🎉. In terms of features, 1.3.1 has just a few small upgrades/fixes. Be sure to check back in for bigger features still in the works! 🚧 🔨 👀

The 1.3.1 dependency update requires Mamba for faster dependency resolution. If you already have anaconda installed, then you can install Mamba in the base environment:

conda install mamba -n base -c conda-forge

Otherwise, follow the recommended installation instruction for Mamba.

Quick install

mamba (Windows/Linux/GPU):

mamba create -y -n sleap -c conda-forge -c nvidia -c sleap -c anaconda sleap=1.3.1

mamba (Mac):

mamba create -y -n sleap -c conda-forge -c anaconda -c sleap sleap=1.3.1

pip (any OS except Apple Silicon):

pip install sleap==1.3.1

Highlights

• Update environment creation by @roomrys in #1366
• Add --max_instances to sleap-track and GUI by @roomrys in #1305
• Increase GUI crop size range from 512 to 832 by @roomrys in #1295
• Allow returning PAF graph during low level inference by @calebweinreb in #1329
• Fix GUI resume training by @roomrys in #1314
• Fixes GPU memory polling using environment variable filtering by @ericleonardis in #1272

Full Changelog

Enhancements

• Centralize video extensions by @talmo in #1244
• Organize docks by @roomrys in #1265
• Increase GUI crop size range from 512 to 832 by @roomrys in #1295
• Add --max_instances to sleap-track and GUI by @roomrys in #1305
• Allow returning PAF graph during low level inference by @calebweinreb in #1329

Fixes

• Disable data caching by default for SingleImageVideos by @talmo in #1243
• Fix single frame GUI increment by @roomrys in #1254
• Fix conversion to numpy array when last frame(s) do not have labels by @talmo in #1307
• Ensure frames to predict list is unique by @roomrys in #1293
• Fix GUI resume training by @roomrys in #1314
• Do not choose top_k instances if max_instances < num centroids by @roomrys in #1313
• Remove --labels and redundant data_path by @roomrys in #1326
• Create copy of config info to modify (gui) by @roomrys in #1325
• Fixes GPU memory polling using environment variable filtering by @ericleonardis in #1272
• Set split_by_inds, test_labels, and validation_labels to default (GUI) by @roomrys in #1331
• Fix (remove) SingleImageVideo caching by @roomrys in #1330

Dependencies

• Update environment creation by @roomrys in #1366

New Contributors

• @ericleonardis made their first contribution in #1272
• @calebweinreb made their first contribution in #1329

Full Changelog: v1.3.0...v1.3.1