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Graceful failing with seeking errors #1712

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merged 3 commits into from
Mar 17, 2024
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@talmo talmo commented Mar 17, 2024

Description

This PR mitigates the longstanding seekability issue. See #1711 for context.

This PR does the simplest thing possible: handling this error by gracefully exiting inference. This should fix many use cases where the seeking error happens towards the end of the video due to inaccurate estimation of the true frame count.

Unfortunately, I don't have any small CI-friendly video files that can be used to write a test, but it's worked locally and the logic is fairly straightforward enough that it shouldn't introduce any weird behavior.

Types of changes

  • Bugfix
  • New feature
  • Refactor / Code style update (no logical changes)
  • Build / CI changes
  • Documentation Update
  • Other (explain)

Does this address any currently open issues?

#1711

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  • Review the guidelines for contributing to this repository
  • Read and sign the CLA and add yourself to the authors list
  • Make sure you are making a pull request against the develop branch (not main). Also you should start your branch off develop
  • Add tests that prove your fix is effective or that your feature works
  • Add necessary documentation (if appropriate)

Thank you for contributing to SLEAP!

❤️

Summary by CodeRabbit

  • Bug Fixes
    • Modified data provider to correctly initialize datasets, ensuring accurate starting points for analysis.
    • Improved error handling in the inference process to gracefully manage frame loading issues, enhancing user experience during interactive predictions.

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coderabbitai bot commented Mar 17, 2024

Walkthrough

The recent modifications focus on enhancing the resilience and efficiency of frame handling in a video processing library. The first change ensures that the initial frame is always selected for processing, optimizing start-up times. The second adjustment introduces error handling for frame loading issues, improving the user experience by preventing abrupt interruptions during interactive prediction tasks. These changes collectively aim to streamline video analysis workflows.

Changes

File Path Change Summary
.../nn/data/providers.py Modified to initialize frame processing at the first frame, enhancing efficiency.
.../nn/inference.py Added exception handling for smoother interactive prediction and reduced error spam.

🐇✨
In the code where frames do dance,
A rabbit hopped, took a glance.
With a tweak and a hop, errors we block,
Ensuring the video flows, without a shock.
So here's to smooth runs, in the code's sun,
For every frame loaded, a victory won.
🌟🐰

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Review Status

Actionable comments generated: 5

Configuration used: CodeRabbit UI

Commits Files that changed from the base of the PR and between 5fa1079 and 330d5cd.
Files selected for processing (2)
  • sleap/nn/data/providers.py (1 hunks)
  • sleap/nn/inference.py (6 hunks)

test_image = tf.convert_to_tensor(
self.video.get_frame(self.video.last_frame_idx)
)
test_image = tf.convert_to_tensor(self.video.get_frame(0))
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Using 0 as the argument for self.video.get_frame to fetch a test image is a straightforward approach to avoid seeking errors. However, it would be beneficial to add a comment explaining this choice for future maintainability.

+ # Fetching the first frame (index 0) to avoid seeking errors, especially towards the end of the video.
  test_image = tf.convert_to_tensor(self.video.get_frame(0))

Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.

Suggested change
test_image = tf.convert_to_tensor(self.video.get_frame(0))
# Fetching the first frame (index 0) to avoid seeking errors, especially towards the end of the video.
test_image = tf.convert_to_tensor(self.video.get_frame(0))

Comment on lines 1585 to 1594

except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise


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The code attempts to handle seeking errors gracefully by checking for a specific error message. However, this approach might not be robust as it relies on the error message string, which could change. Consider using exception types for more reliable error handling.

- if "Unable to load frame" in str(e):
+ if isinstance(e, FrameLoadError):

Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.

Suggested change
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if isinstance(e, FrameLoadError):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

Comment on lines 2645 to 2653

except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

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Similar to the previous comment, the error handling here also relies on string matching. It's recommended to use exception types for error handling.

- if "Unable to load frame" in str(e):
+ if isinstance(e, FrameLoadError):

Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.

Suggested change
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if isinstance(e, FrameLoadError):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

Comment on lines 3287 to 3295

except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

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Again, the error handling strategy based on string matching is observed. Using exception types would enhance the robustness of the error handling mechanism.

- if "Unable to load frame" in str(e):
+ if isinstance(e, FrameLoadError):

Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.

Suggested change
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if isinstance(e, FrameLoadError):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

Comment on lines 4783 to 4791

except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

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The error handling pattern based on string matching is repeated here. It's advisable to use exception types for more reliable error handling.

- if "Unable to load frame" in str(e):
+ if isinstance(e, FrameLoadError):

Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.

Suggested change
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if "Unable to load frame" in str(e):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise
except KeyError as e:
# Gracefully handle seeking errors by early termination.
if isinstance(e, FrameLoadError):
pass # TODO: Print warning obeying verbosity? (This code path is also
# called for interactive prediction where we don't want any spam.)
else:
raise

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Review Status

Actionable comments generated: 0

Configuration used: CodeRabbit UI

Commits Files that changed from the base of the PR and between 330d5cd and 59d105f.
Files selected for processing (1)
  • sleap/nn/inference.py (6 hunks)
Files skipped from review as they are similar to previous changes (1)
  • sleap/nn/inference.py

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codecov bot commented Mar 17, 2024

Codecov Report

Attention: Patch coverage is 8.00000% with 23 lines in your changes are missing coverage. Please review.

Project coverage is 73.31%. Comparing base (60a441f) to head (59d105f).
Report is 1 commits behind head on develop.

Files Patch % Lines
sleap/nn/inference.py 4.16% 23 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #1712      +/-   ##
===========================================
- Coverage    73.38%   73.31%   -0.07%     
===========================================
  Files          134      134              
  Lines        24064    24088      +24     
===========================================
+ Hits         17659    17660       +1     
- Misses        6405     6428      +23     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@talmo talmo merged commit bab9b1b into develop Mar 17, 2024
7 of 9 checks passed
@talmo talmo deleted the talmo/graceful-seek-fail branch March 17, 2024 02:22
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