Merge pull request #50 from t0mdavid-m/new_release

New release
t0mdavid-m · Sep 23, 2024 · 9f471db · 9f471db
2 parents 884db1d + c15f206
commit 9f471db
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Showing 5 changed files with 28 additions and 24 deletions.
diff --git a/js-component/dist/assets/index-fe61c0a4.js → js-component/dist/assets/index-858fd570.js b/js-component/dist/assets/index-fe61c0a4.js → js-component/dist/assets/index-858fd570.js
diff --git a/js-component/dist/assets/index-ca1bcd20.css → js-component/dist/assets/index-944dcd57.css b/js-component/dist/assets/index-ca1bcd20.css → js-component/dist/assets/index-944dcd57.css
diff --git a/js-component/dist/index.html b/js-component/dist/index.html
@@ -5,8 +5,8 @@
     <link rel="icon" href="./favicon.ico" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>openms-streamlit-vue-component</title>
-    <script type="module" crossorigin src="./assets/index-fe61c0a4.js"></script>
-    <link rel="stylesheet" href="./assets/index-ca1bcd20.css">
+    <script type="module" crossorigin src="./assets/index-858fd570.js"></script>
+    <link rel="stylesheet" href="./assets/index-944dcd57.css">
   </head>
   <body>
     <div id="app"></div>

diff --git a/openms-streamlit-vue-component b/openms-streamlit-vue-component
diff --git a/pages/FLASHTaggerViewer.py b/pages/FLASHTaggerViewer.py
@@ -125,7 +125,11 @@ def sendDataToJS(selected_data, layout_info_per_exp, grid_key='flash_viewer_grid
             mod_masses = [float(m) for m in str(row['ModMass']).split(';')]
             mod_starts = [int(float(s)) for s in str(row['ModStart']).split(';')]
             mod_ends = [int(float(s)) for s in str(row['ModEnd']).split(';')]
-            mod_labels = [s[:-1].replace(',', '; ') for s in str(row['ModID']).split(';')]
+            if pd.isna(row['ModID']):
+                mod_labels = [''] * row['ModCount']
+            else:
+                mod_labels = [s[:-1].replace(',', '; ') for s in str(row['ModID']).split(';')]
+            print(mod_labels)
         else:
             mod_masses = []
             mod_starts = []
@@ -142,13 +146,13 @@ def sendDataToJS(selected_data, layout_info_per_exp, grid_key='flash_viewer_grid
         )
 
         sequence_data[pid]['sequence'] = list(sequence)
-        sequence_data[pid]['proteoform_start'] = start_index
-        sequence_data[pid]['proteoform_end'] = end_index
+        sequence_data[pid]['proteoform_start'] = proteoform_start - 1
+        sequence_data[pid]['proteoform_end'] = proteoform_end - 1
         sequence_data[pid]['computed_mass'] = row['ProteoformMass']
         sequence_data[pid]['theoretical_mass'] = remove_ambigious(AASequence.fromString(sequence)).getMonoWeight()
-
         sequence_data[pid]['modifications'] = [
             {
+                # Modfications are zero based
                 'start' : s - 1,
                 'end' : e - 1,
                 'mass_diff' : m,