Add asterisks to function args

python/tests/beagle_numba.py

@@ -205,7 +205,7 @@ def check_data(ref_h, query_h):
     return True
 
 
-def convert_to_genetic_map_positions(pos, genetic_map=None):
+def convert_to_genetic_map_positions(pos, *, genetic_map=None):
     """
     Convert physical positions (bp) to genetic map positions (cM).
 
@@ -525,6 +525,7 @@ def run_interpolation_beagle(
     ref_h,
     query_h,
     pos,
+    *,
     ne=1e6,
     error_rate=1e-4,
     genetic_map=None,
@@ -601,6 +602,7 @@ def run_tsimpute(
     pos,
     tp,
     mp,
+    *,
     precision=22,
     genetic_map=None,
 ):
@@ -778,7 +780,7 @@ def compute_dosage_r_squared(gt_probs):
     pass
 
 
-def compute_allele_frequency(gt_probs, allele=1):
+def compute_allele_frequency(gt_probs, *, allele=1):
     """
     Estimate the frequency of an allele at a site from posterior genotype probabilities.
 
@@ -809,7 +811,7 @@ def compute_allele_frequency(gt_probs, allele=1):
         return est_allele_count_1 / (2 * n)
 
 
-def write_vcf(impdata, out_file, chr_name="1"):
+def write_vcf(impdata, out_file, *, chr_name="1"):
     """
     Print imputation results in VCF format, following the output of BEAGLE 4.1.