include libsbml dependency

sys-bio · Oct 17, 2023 · 0f9c02f · 0f9c02f
1 parent b1c64de
commit 0f9c02f
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diff --git a/vscode-antimony/src/server/virtualEnvIntelMac.sh b/vscode-antimony/src/server/virtualEnvIntelMac.sh
@@ -15,7 +15,7 @@ ve() {
 
   sudo -u $USER "$PYTHON39_PATH" -m venv $HOME/${venv} --system-site-package
 
-  echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0' > $HOME/${venv}/all-requirements.txt
+  echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0\nlibsbml' > $HOME/${venv}/all-requirements.txt
 
   # Install each dependency one at a time
   while IFS= read -r dependency; do

diff --git a/vscode-antimony/src/server/virtualEnvLinux.sh b/vscode-antimony/src/server/virtualEnvLinux.sh
@@ -8,7 +8,7 @@ ve() {
 
     python3 -m venv $HOME/${venv} --system-site-package
 
-    echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0' > $HOME/${venv}/all-requirements.txt
+    echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0\nlibsbml' > $HOME/${venv}/all-requirements.txt
 
     total_steps=$(wc -l < $HOME/${venv}/all-requirements.txt)
     current_step=0

diff --git a/vscode-antimony/src/server/virtualEnvSilicon.sh b/vscode-antimony/src/server/virtualEnvSilicon.sh
@@ -14,7 +14,7 @@ ve() {
 
     sudo -u $USER python3 -m venv $HOME/${venv} --system-site-package
 
-    echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0' > $HOME/${venv}/all-requirements.txt
+    echo $'appdirs==1.4.4\ncertifi==2020.12.5\nchardet==4.0.0\ncolorama==0.4.4\ncolorlog==4.8.0 \neasydev==0.11.0\nidna==2.10\ngit+https://github.com/lark-parser/lark.git@5b8c04ca83b9#egg=lark_parser\nlibChEBIpy==1.0.10\npexpect==4.8.0\nptyprocess==0.7.0\npygls==0.9.1\nrequests==2.25.1\nrequests-cache==0.5.2\nsix==1.15.0\nurllib3==1.26.4\nantimony\nbioservices==1.8.3\n==0.0.9\norjson==3.8.0\nlibsbml' > $HOME/${venv}/all-requirements.txt
 
     total_steps=$(wc -l < $HOME/${venv}/all-requirements.txt)
     current_step=0