Rename moved from yml file.

Don't need the try/except around the original rename; it's the first pass.
sys-bio · Jun 4, 2024 · dca64ad · dca64ad
1 parent 52658df
commit dca64ad
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Showing 2 changed files with 2 additions and 8 deletions.
diff --git a/fix_manual_corrections.yml b/fix_manual_corrections.yml
@@ -391,9 +391,6 @@ BIOMD0000000683:
   - filename: 'MODEL1006230062.sedml'
     type: 'rename_file'
     new: 'BIOMD0000000683.sedml'
-  - filename: 'MODEL1006230062.xml'
-    type: 'rename_file'
-    new: 'BIOMD0000000683.xml'
   - filename: 'BIOMD0000000683.sedml'
     type: replace_text
     old: source="MODEL1006230062.xml"

diff --git a/rename_sbml_files.py b/rename_sbml_files.py
@@ -49,11 +49,8 @@ def run(id, sbml_filenames, sbml_master):
                 os.rename(filename, newfilename)
                 remove_list.append((filename, newfilename))
         for (old, new) in remove_list:
-            try:
-                sbml_filenames.remove(old)
-                sbml_filenames.append(new)
-            except:
-                pass
+            sbml_filenames.remove(old)
+            sbml_filenames.append(new)
     if id in REMOVE:
         old = REMOVE[id]
         if sbml_master == old: