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WIP: Diabetic retinopathy #1483

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@dehall dehall commented Jul 8, 2024

WORK IN PROGRESS - DO NOT MERGE YET

This PR adds modules for Diabetic Retinopathy progression and treatment. These were originally developed for a synthetic dataset for the National Eye Institute on the diabetic_retinopathy branch. Because some "experimental" features were used, we don't necessarily want to merge that to master as-is.

For a full description of the modules, see the writeup at https://github.com/synthetichealth/synthea/blob/diabetic_retinopathy/docs/diabetic_retinopathy_module_guide.md
Also, some synthetic patients are available at:

  1. https://synthetichealth.github.io/spt/#/?patient=github/synthetichealth/synthea/diabetic_retinopathy/samples/Eve68_Bahringer146.json
  2. https://synthetichealth.github.io/spt/#/?patient=github/synthetichealth/synthea/diabetic_retinopathy/samples/Ken316_Hermann103.json
  3. https://synthetichealth.github.io/spt/#/?patient=github/synthetichealth/synthea/diabetic_retinopathy/samples/Maryjane289_White193.json
  4. https://synthetichealth.github.io/spt/#/?patient=github/synthetichealth/synthea/diabetic_retinopathy/samples/Eve68_Pfannerstill264.json
  5. https://synthetichealth.github.io/spt/#/?patient=github/synthetichealth/synthea/diabetic_retinopathy/samples/Janet238_Marquardt819.json

In addition to the new modules, this adds a couple minor tweaks:

  • A Flexporter change, to allow deleting resources by FHIRPath
  • Adds a "note" field to HealthRecord.Entry which will be included in the generated notes in a couple places. Nothing currently sets this field (it was used in the original branch by a Java submodule that generated unstructured text) but I think it could be useful in the future.

This PR should be squashed prior to merging so that the files that were added but then removed don't take up space

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