rebuild graphs, javadoc and binary distribution at 055d977

synthetichealth · Aug 26, 2024 · 346c969 · 346c969
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Showing 54 changed files with 1,915 additions and 413 deletions.
diff --git a/build/javadoc/allclasses-index.html b/build/javadoc/allclasses-index.html
diff --git a/build/javadoc/allclasses.html b/build/javadoc/allclasses.html
@@ -73,6 +73,7 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="org/mitre/synthea/world/agents/Clinician.html" title="class in org.mitre.synthea.world.agents">Clinician</a></li>
 <li><a href="org/mitre/synthea/world/concepts/ClinicianSpecialty.html" title="class in org.mitre.synthea.world.concepts">ClinicianSpecialty</a></li>
 <li><a href="org/mitre/synthea/world/geography/CMSStateCodeMapper.html" title="class in org.mitre.synthea.world.geography">CMSStateCodeMapper</a></li>
+<li><a href="org/mitre/synthea/export/rif/CodeMapper.html" title="class in org.mitre.synthea.export.rif">CodeMapper</a></li>
 <li><a href="org/mitre/synthea/engine/Components.html" title="class in org.mitre.synthea.engine">Components</a></li>
 <li><a href="org/mitre/synthea/engine/Components.Attachment.html" title="class in org.mitre.synthea.engine">Components.Attachment</a></li>
 <li><a href="org/mitre/synthea/engine/Components.DateInput.html" title="class in org.mitre.synthea.engine">Components.DateInput</a></li>
@@ -259,6 +260,7 @@ <h1 class="bar">All&nbsp;Classes</h1>
 <li><a href="org/mitre/synthea/engine/ReactionProbabilities.html" title="class in org.mitre.synthea.engine">ReactionProbabilities</a></li>
 <li><a href="org/mitre/synthea/engine/ReactionProbabilities.SeverityProbability.html" title="class in org.mitre.synthea.engine">ReactionProbabilities.SeverityProbability</a></li>
 <li><a href="org/mitre/synthea/export/rif/RIFExporter.html" title="class in org.mitre.synthea.export.rif">RIFExporter</a></li>
+<li><a href="org/mitre/synthea/export/rif/RIFExporter.ClaimType.html" title="enum in org.mitre.synthea.export.rif">RIFExporter.ClaimType</a></li>
 <li><a href="RunFlexporter.html" title="class in &lt;Unnamed&gt;">RunFlexporter</a></li>
 <li><a href="org/mitre/synthea/identity/Seed.html" title="class in org.mitre.synthea.identity">Seed</a></li>
 <li><a href="org/mitre/synthea/helpers/SerializableTypeAdapter.html" title="class in org.mitre.synthea.helpers">SerializableTypeAdapter</a></li>

diff --git a/build/javadoc/constant-values.html b/build/javadoc/constant-values.html
@@ -182,14 +182,14 @@ <h2 title="org.mitre">org.mitre.*</h2>
 <tr class="rowColor">
 <td class="colFirst"><a id="org.mitre.synthea.export.rif.RIFExporter.BB2_HIC_ID">
 <!--   -->
-</a><code>protected&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
+</a><code>public&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
 <th class="colSecond" scope="row"><code><a href="org/mitre/synthea/export/rif/RIFExporter.html#BB2_HIC_ID">BB2_HIC_ID</a></code></th>
 <td class="colLast"><code>"BB2_HIC_ID"</code></td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><a id="org.mitre.synthea.export.rif.RIFExporter.BB2_MBI">
 <!--   -->
-</a><code>protected&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
+</a><code>public&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
 <th class="colSecond" scope="row"><code><a href="org/mitre/synthea/export/rif/RIFExporter.html#BB2_MBI">BB2_MBI</a></code></th>
 <td class="colLast"><code>"BB2_MBI"</code></td>
 </tr>
@@ -210,7 +210,7 @@ <h2 title="org.mitre">org.mitre.*</h2>
 <tr class="rowColor">
 <td class="colFirst"><a id="org.mitre.synthea.export.rif.RIFExporter.COVERAGE_START_DATE">
 <!--   -->
-</a><code>protected&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
+</a><code>public&nbsp;static&nbsp;final&nbsp;java.lang.String</code></td>
 <th class="colSecond" scope="row"><code><a href="org/mitre/synthea/export/rif/RIFExporter.html#COVERAGE_START_DATE">COVERAGE_START_DATE</a></code></th>
 <td class="colLast"><code>"BB2_COVERAGE_START_DATE"</code></td>
 </tr>

diff --git a/build/javadoc/index-all.html b/build/javadoc/index-all.html
diff --git a/build/javadoc/member-search-index.js b/build/javadoc/member-search-index.js
diff --git a/build/javadoc/member-search-index.zip b/build/javadoc/member-search-index.zip
diff --git a/build/javadoc/org/mitre/synthea/engine/Distribution.Kind.html b/build/javadoc/org/mitre/synthea/engine/Distribution.Kind.html
@@ -178,6 +178,10 @@ <h3>Enum Constant Summary</h3>
 <td class="colLast">&nbsp;</td>
 </tr>
 <tr class="rowColor">
+<th class="colFirst" scope="row"><code><span class="memberNameLink"><a href="#TRIANGULAR">TRIANGULAR</a></span></code></th>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="altColor">
 <th class="colFirst" scope="row"><code><span class="memberNameLink"><a href="#UNIFORM">UNIFORM</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
@@ -275,12 +279,21 @@ <h4>UNIFORM</h4>
 <a id="EXPONENTIAL">
 <!--   -->
 </a>
-<ul class="blockListLast">
+<ul class="blockList">
 <li class="blockList">
 <h4>EXPONENTIAL</h4>
 <pre>public static final&nbsp;<a href="Distribution.Kind.html" title="enum in org.mitre.synthea.engine">Distribution.Kind</a> EXPONENTIAL</pre>
 </li>
 </ul>
+<a id="TRIANGULAR">
+<!--   -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>TRIANGULAR</h4>
+<pre>public static final&nbsp;<a href="Distribution.Kind.html" title="enum in org.mitre.synthea.engine">Distribution.Kind</a> TRIANGULAR</pre>
+</li>
+</ul>
 </li>
 </ul>
 </section>

diff --git a/build/javadoc/org/mitre/synthea/engine/Module.html b/build/javadoc/org/mitre/synthea/engine/Module.html
@@ -313,25 +313,25 @@ <h3>Method Summary</h3>
 <td class="colLast">&nbsp;</td>
 </tr>
 <tr id="i4" class="altColor">
-<td class="colFirst"><code>static java.util.List&lt;<a href="Module.html" title="class in org.mitre.synthea.engine">Module</a>&gt;</code></td>
-<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getModules()">getModules</a></span>()</code></th>
+<td class="colFirst"><code>static java.util.List&lt;java.nio.file.Path&gt;</code></td>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getModulePaths()">getModulePaths</a></span>()</code></th>
 <td class="colLast">
-<div class="block">Get the top-level modules.</div>
+<div class="block">Get the paths to the modules directories, ensuring the right file system support is loaded if
+ we are running from a jar file.</div>
 </td>
 </tr>
 <tr id="i5" class="rowColor">
 <td class="colFirst"><code>static java.util.List&lt;<a href="Module.html" title="class in org.mitre.synthea.engine">Module</a>&gt;</code></td>
-<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getModules(java.util.function.Predicate)">getModules</a></span>&#8203;(java.util.function.Predicate&lt;java.lang.String&gt;&nbsp;pathPredicate)</code></th>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getModules()">getModules</a></span>()</code></th>
 <td class="colLast">
-<div class="block">Get a list of top-level modules including core and submodules.</div>
+<div class="block">Get the top-level modules.</div>
 </td>
 </tr>
 <tr id="i6" class="altColor">
-<td class="colFirst"><code>static java.nio.file.Path</code></td>
-<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getModulesPath()">getModulesPath</a></span>()</code></th>
+<td class="colFirst"><code>static java.util.List&lt;<a href="Module.html" title="class in org.mitre.synthea.engine">Module</a>&gt;</code></td>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getModules(java.util.function.Predicate)">getModules</a></span>&#8203;(java.util.function.Predicate&lt;java.lang.String&gt;&nbsp;pathPredicate)</code></th>
 <td class="colLast">
-<div class="block">The path to the modules directory, ensuring the right file system support is loaded if
- we are running from a jar file.</div>
+<div class="block">Get a list of top-level modules including core and submodules.</div>
 </td>
 </tr>
 <tr id="i7" class="rowColor">
@@ -535,16 +535,16 @@ <h4>Module</h4>
 <!--   -->
 </a>
 <h3>Method Detail</h3>
-<a id="getModulesPath()">
+<a id="getModulePaths()">
 <!--   -->
 </a>
 <ul class="blockList">
 <li class="blockList">
-<h4>getModulesPath</h4>
-<pre class="methodSignature">public static&nbsp;java.nio.file.Path&nbsp;getModulesPath()
-                                         throws java.net.URISyntaxException,
-                                                java.io.IOException</pre>
-<div class="block">The path to the modules directory, ensuring the right file system support is loaded if
+<h4>getModulePaths</h4>
+<pre class="methodSignature">public static&nbsp;java.util.List&lt;java.nio.file.Path&gt;&nbsp;getModulePaths()
+                                                         throws java.net.URISyntaxException,
+                                                                java.io.IOException</pre>
+<div class="block">Get the paths to the modules directories, ensuring the right file system support is loaded if
  we are running from a jar file.</div>
 <dl>
 <dt><span class="returnLabel">Returns:</span></dt>

diff --git a/build/javadoc/org/mitre/synthea/export/rif/BeneficiaryExporter.html b/build/javadoc/org/mitre/synthea/export/rif/BeneficiaryExporter.html
@@ -27,8 +27,8 @@
     catch(err) {
     }
 //-->
-var data = {"i0":10};
-var tabs = {65535:["t0","All Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
+var data = {"i0":10,"i1":9};
+var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],2:["t2","Instance Methods"],8:["t4","Concrete Methods"]};
 var altColor = "altColor";
 var rowColor = "rowColor";
 var tableTab = "tableTab";
@@ -88,7 +88,7 @@
 <div>
 <ul class="subNavList">
 <li>Summary:&nbsp;</li>
-<li>Nested&nbsp;|&nbsp;</li>
+<li><a href="#nested.class.summary">Nested</a>&nbsp;|&nbsp;</li>
 <li><a href="#field.summary">Field</a>&nbsp;|&nbsp;</li>
 <li><a href="#constructor.summary">Constr</a>&nbsp;|&nbsp;</li>
 <li><a href="#method.summary">Method</a></li>
@@ -145,6 +145,23 @@ <h2 title="Class BeneficiaryExporter" class="title">Class BeneficiaryExporter</h
 <div class="summary">
 <ul class="blockList">
 <li class="blockList">
+<!-- ======== NESTED CLASS SUMMARY ======== -->
+<section>
+<ul class="blockList">
+<li class="blockList"><a id="nested.class.summary">
+<!--   -->
+</a>
+<h3>Nested Class Summary</h3>
+<ul class="blockList">
+<li class="blockList"><a id="nested.classes.inherited.from.class.org.mitre.synthea.export.rif.RIFExporter">
+<!--   -->
+</a>
+<h3>Nested classes/interfaces inherited from class&nbsp;org.mitre.synthea.export.rif.<a href="RIFExporter.html" title="class in org.mitre.synthea.export.rif">RIFExporter</a></h3>
+<code><a href="RIFExporter.ClaimType.html" title="enum in org.mitre.synthea.export.rif">RIFExporter.ClaimType</a></code></li>
+</ul>
+</li>
+</ul>
+</section>
 <!-- =========== FIELD SUMMARY =========== -->
 <section>
 <ul class="blockList">
@@ -170,7 +187,7 @@ <h3>Field Summary</h3>
 <td class="colLast">&nbsp;</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code>protected static java.util.concurrent.atomic.AtomicReference&lt;<a href="identifiers/MBI.html" title="class in org.mitre.synthea.export.rif.identifiers">MBI</a>&gt;</code></td>
+<td class="colFirst"><code>static java.util.concurrent.atomic.AtomicReference&lt;<a href="identifiers/MBI.html" title="class in org.mitre.synthea.export.rif.identifiers">MBI</a>&gt;</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#nextMbi">nextMbi</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
@@ -216,7 +233,7 @@ <h3>Constructor Summary</h3>
 </a>
 <h3>Method Summary</h3>
 <table class="memberSummary">
-<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
+<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd">&nbsp;</span></span><span id="t1" class="tableTab"><span><a href="javascript:show(1);">Static Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd">&nbsp;</span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd">&nbsp;</span></span></caption>
 <tr>
 <th class="colFirst" scope="col">Modifier and Type</th>
 <th class="colSecond" scope="col">Method</th>
@@ -231,13 +248,20 @@ <h3>Method Summary</h3>
 <div class="block">Export a beneficiary details for single person.</div>
 </td>
 </tr>
+<tr id="i1" class="rowColor">
+<td class="colFirst"><code>static long</code></td>
+<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#getCoverageStartDate(org.mitre.synthea.world.agents.Person)">getCoverageStartDate</a></span>&#8203;(<a href="../../world/agents/Person.html" title="class in org.mitre.synthea.world.agents">Person</a>&nbsp;person)</code></th>
+<td class="colLast">
+<div class="block">Get the start date of Medicare coverage.</div>
+</td>
+</tr>
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 <ul class="blockList">
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 <h3>Methods inherited from class&nbsp;org.mitre.synthea.export.rif.<a href="RIFExporter.html" title="class in org.mitre.synthea.export.rif">RIFExporter</a></h3>
-<code><a href="RIFExporter.html#bb2TaxId(java.lang.String)">bb2TaxId</a>, <a href="RIFExporter.html#getBillableProcedureAndMedAdminItems(org.mitre.synthea.world.concepts.HealthRecord.Encounter)">getBillableProcedureAndMedAdminItems</a>, <a href="RIFExporter.html#getDateOfDisability(org.mitre.synthea.world.agents.Person)">getDateOfDisability</a>, <a href="RIFExporter.html#getDiagnosesCodes(org.mitre.synthea.world.agents.Person,long)">getDiagnosesCodes</a>, <a href="RIFExporter.html#getEarliestDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String)">getEarliestDiagnosis</a>, <a href="RIFExporter.html#getEarliestDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String%5B%5D)">getEarliestDiagnosis</a>, <a href="RIFExporter.html#getEarliestUnmappedDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String)">getEarliestUnmappedDiagnosis</a>, <a href="RIFExporter.html#getEarliestUnmappedDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String%5B%5D)">getEarliestUnmappedDiagnosis</a>, <a href="RIFExporter.html#getFirstMappedHCPCSCode(java.util.List,org.mitre.synthea.helpers.RandomNumberGenerator)">getFirstMappedHCPCSCode</a>, <a href="RIFExporter.html#hasPartABCoverage(org.mitre.synthea.world.agents.Person,long)">hasPartABCoverage</a>, <a href="RIFExporter.html#isDisabled(org.mitre.synthea.world.agents.Person)">isDisabled</a>, <a href="RIFExporter.html#parseSimpleDate(java.lang.String)">parseSimpleDate</a></code></li>
+<code><a href="RIFExporter.html#bb2TaxId(java.lang.String)">bb2TaxId</a>, <a href="RIFExporter.html#getBillableProcedureAndMedAdminItems(org.mitre.synthea.world.concepts.HealthRecord.Encounter)">getBillableProcedureAndMedAdminItems</a>, <a href="RIFExporter.html#getClaimTypes(org.mitre.synthea.world.concepts.HealthRecord.Encounter)">getClaimTypes</a>, <a href="RIFExporter.html#getDateOfDisability(org.mitre.synthea.world.agents.Person)">getDateOfDisability</a>, <a href="RIFExporter.html#getDiagnosesCodes(org.mitre.synthea.world.agents.Person,long)">getDiagnosesCodes</a>, <a href="RIFExporter.html#getEarliestDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String)">getEarliestDiagnosis</a>, <a href="RIFExporter.html#getEarliestDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String%5B%5D)">getEarliestDiagnosis</a>, <a href="RIFExporter.html#getEarliestUnmappedDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String)">getEarliestUnmappedDiagnosis</a>, <a href="RIFExporter.html#getEarliestUnmappedDiagnosis(org.mitre.synthea.world.agents.Person,java.lang.String%5B%5D)">getEarliestUnmappedDiagnosis</a>, <a href="RIFExporter.html#getFirstMappedHCPCSCode(java.util.List,org.mitre.synthea.helpers.RandomNumberGenerator)">getFirstMappedHCPCSCode</a>, <a href="RIFExporter.html#hasPartABCoverage(org.mitre.synthea.world.agents.Person,long)">hasPartABCoverage</a>, <a href="RIFExporter.html#isDisabled(org.mitre.synthea.world.agents.Person)">isDisabled</a>, <a href="RIFExporter.html#parseSimpleDate(java.lang.String)">parseSimpleDate</a></code></li>
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@@ -286,7 +310,7 @@ <h4>nextHicn</h4>
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 <h4>nextMbi</h4>
-<pre>protected static final&nbsp;java.util.concurrent.atomic.AtomicReference&lt;<a href="identifiers/MBI.html" title="class in org.mitre.synthea.export.rif.identifiers">MBI</a>&gt; nextMbi</pre>
+<pre>public static final&nbsp;java.util.concurrent.atomic.AtomicReference&lt;<a href="identifiers/MBI.html" title="class in org.mitre.synthea.export.rif.identifiers">MBI</a>&gt; nextMbi</pre>
 </li>
 </ul>
 </li>
@@ -326,7 +350,7 @@ <h3>Method Detail</h3>
 <a id="export(org.mitre.synthea.world.agents.Person,long,long)">
 <!--   -->
 </a>
-<ul class="blockListLast">
+<ul class="blockList">
 <li class="blockList">
 <h4>export</h4>
 <pre class="methodSignature">public&nbsp;java.lang.String&nbsp;export&#8203;(<a href="../../world/agents/Person.html" title="class in org.mitre.synthea.world.agents">Person</a>&nbsp;person,
@@ -346,6 +370,23 @@ <h4>export</h4>
 </dl>
 </li>
 </ul>
+<a id="getCoverageStartDate(org.mitre.synthea.world.agents.Person)">
+<!--   -->
+</a>
+<ul class="blockListLast">
+<li class="blockList">
+<h4>getCoverageStartDate</h4>
+<pre class="methodSignature">public static&nbsp;long&nbsp;getCoverageStartDate&#8203;(<a href="../../world/agents/Person.html" title="class in org.mitre.synthea.world.agents">Person</a>&nbsp;person)</pre>
+<div class="block">Get the start date of Medicare coverage. This is the earliest of the
+ beneficiary's 65th birthday, ESRD diagnosis or disability diagnosis.</div>
+<dl>
+<dt><span class="paramLabel">Parameters:</span></dt>
+<dd><code>person</code> - the person</dd>
+<dt><span class="returnLabel">Returns:</span></dt>
+<dd>the date as ms since the epoch</dd>
+</dl>
+</li>
+</ul>
 </li>
 </ul>
 </section>
@@ -397,7 +438,7 @@ <h4>export</h4>
 <div>
 <ul class="subNavList">
 <li>Summary:&nbsp;</li>
-<li>Nested&nbsp;|&nbsp;</li>
+<li><a href="#nested.class.summary">Nested</a>&nbsp;|&nbsp;</li>
 <li><a href="#field.summary">Field</a>&nbsp;|&nbsp;</li>
 <li><a href="#constructor.summary">Constr</a>&nbsp;|&nbsp;</li>
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