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slideExtractTiles
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Licence. The MIT License (MIT): http://opensource.org/licenses/MIT.
Copyright (c) 2014-2024, Bas G.L. Nelissen & Sander W. van der Laan, UMC Utrecht, Utrecht, the Netherlands.
Introduction
General instructions
slide2Tiles
slideAppend.sh
slideAppendGCT.sh
slideConvert
slideDirectory
slideDupIdentify.py
slideEMask
slideEntropySegmentation.py
slideExtract.py
slideExtractTiles.py
slideInfo
slideInfo.py
slideJobChecker
slideLookup
slideMacro
slideMacro.py
slideMask
slideMoveNewWSI.py
slideNormalize
slideRename
slideRename.py
slideThumb
slideThumb.py
slideQuantify_v1
slideQuantify_v1_1_expresshist_mask.sh
slideQuantify_v1_2_expresshist_tile.sh
slideQuantify_v1_3_tile_normalizing.sh
slideQuantify_v1_4_cellprofiler.sh
slideQuantify_v1_5_wrapup.sh
slideQuantify_v2
slideQuantify_v2_1_entropy_segmentation.sh
slideQuantify_v2_2_extract_tiles.sh
slideQuantify_v2_3_tile_normalizing.sh
slideQuantify_v2_4_cellprofiler.sh
slideQuantify_v2_5_wrapup.sh
slideQuantifyOSX
slideQuantify_cellprofiler.sh
slideQuantify_mask.sh
slideQuantify_normalizing.sh
slideQuantify_tiling.sh
slideQuantify_wrapup.sh
Conda version (default/preferred)
Homebrew version
Rocky 8 Conda version (default/preferred)
Ubuntu 16.04 LTS
Ubuntu 12.04
CentOS7 Conda version with modules
Administrator version