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ci: tests#187

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a-frantz merged 26 commits intomainstjudecloud/workflows:mainfrom ci/testsstjudecloud/workflows:ci/testsCopy head branch name to clipboardNov 26, 2024

+857-212

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Commits on Nov 25, 2024

• chore: mv tests/tools/input to tests/input

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• fix: update test paths

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• revise: rename star_db to include contigs

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• WIP

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• Update star.wdl

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• WIP

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• WIP

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• fix: only grep for RG at start of line

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• fix: update paths

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• revise: rename things

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• WIP

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• WIP

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• Merge branch 'main' into ci/tests

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• fix:

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• fix

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• Update test_fastqc.yaml

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• Update test_fastqc.yaml

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• Update multiqc.json

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Commits on Nov 26, 2024

• fix: more renaming

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• Update test_samtools.py

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• Update test_util.yaml

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• Update test_picard.yaml

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• Update test_picard.yaml

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• Update lint-check.yaml

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• fix: bump to latest util image

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• chore: don't use branch image

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