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SEAseq v2.4 (and PEAseq v1.0)
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@madetunj madetunj released this 29 Jul 19:16
· 47 commits to master since this release
2.4
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Learn about vigilant mode.

SEAseq

Minor Update:

  • Reorganized all coverage files to its dedicated folder /COVERAGE_files
  • Changed color scale to be color-blind friendly

PEAseq

Initial Release

  • PEAseq (Paired-End Antibody sequencing pipeline)
  • Performs all analysis provided in SEAseq and also in a paired-end aware manner; results from SEAseq will be stored under /single-end_mode.
  • Organizational structure is adopted from SEAseq.
# For sample FASTQs only
java -jar cromwell.jar run peaseq-case.wdl -i inputs.json -o options.json

# For sample FASTQs with Input Control or IgG
java -jar cromwell.jar run peaseq-control.wdl -i inputs.json -o options.json
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