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ProteinPaint

ProteinPaint is a data visualization platform publicly accessible at https://proteinpaint.stjude.org/. It was originally a cancer mutation visualization tool (Nature Genetics 2016, Cancer Cell 2021). It is rapidly evolving into a codebase for data portals, focusing on sharing and integrating multi-modal datasets from diverse biomedical cohort studies, such as the St. Jude Survivorship portal. ProteinPaint's visualization tools are also integrated in the NIH Genomic Data Commons portal.

Customer References

Installation: installation documentation for customers

Build: how to obtain or build Proteinpaint as a Docker image

• Option A: Pull a Prebuilt Image (Recommended)
• Option B: Use NPM
• Option C: Build from Source

URL parameters: How to launch ProteinPaint apps and tracks from a URL

Plots

• Scatter Plot
• Summary Plot
• Matrix
• Survival Plot
• Violin Plot