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Recent Issues #49

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merged 5 commits into from
Nov 28, 2023
Merged

Recent Issues #49

merged 5 commits into from
Nov 28, 2023

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adthrasher
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@adthrasher adthrasher commented Nov 17, 2023 •
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@adthrasher adthrasher changed the title Recent Issues [WIP] Recent Issues Nov 17, 2023
@adthrasher adthrasher self-assigned this Nov 17, 2023
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adthrasher commented Nov 17, 2023 •
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Successfully ran bwa aln through locally with cwltool invoking containers for each step. Also ran through using cwltool inside a single container.

  • Test with STAR
  • Test with bwa mem
  • Add WDL instructions to README
  • Test WDL

mcrusch
mcrusch reviewed Nov 17, 2023
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In its current state, I believe this should fix #45.

@adthrasher adthrasher changed the title [WIP] Recent Issues Recent Issues Nov 22, 2023
@adthrasher adthrasher merged commit e1c7539 into main Nov 28, 2023
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@adthrasher adthrasher deleted the fixes_cwl branch November 28, 2023 14:03
This was linked to issues Nov 28, 2023
Tie BAM is too large #45
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Update sample_data to reflect merged tie bams and contam lists #43
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This was referenced Nov 28, 2023
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Tie BAM is too large Update sample_data to reflect merged tie bams and contam lists
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