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@stewart-lab

stewart-lab

The Stewart Computational Biology group at the Morgridge Institute for Research

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  1. SKiM SKiM Public

    Serial KinderMiner (or simply SKiM) is general literature-based discovery system for querying all ~30 million PubMed abstracts.

    Python 8 1

  2. kinderminer_kg kinderminer_kg Public

    Build a knowledge graph from PubMed abstracts using KinderMiner, Prodigy, and spaCy

    Python 5

  3. CHARTS CHARTS Public

    CHARTS: Characterizing Tumor Subpopulations

    Python 3

  4. scRNAseq_downstream scRNAseq_downstream Public

    Code for the analysis of the pig retinal organoid data from David Gamm

    Jupyter Notebook 2

  5. blue_whale blue_whale Public

    Blue whale project related scripts and small datasets

    R 1

  6. ROC_and_PR ROC_and_PR Public

    Python 1

Repositories

Showing 10 of 32 repositories
  • scRNAseq_downstream Public

    Code for the analysis of the pig retinal organoid data from David Gamm

    stewart-lab/scRNAseq_downstream’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Oct 29, 2024
  • scRNAseq_library Public
    stewart-lab/scRNAseq_library’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 30, 2024
  • fast_km Public

    A Containerized KinderMiner / Serial KinderMiner Server

    stewart-lab/fast_km’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Aug 15, 2024
  • LiFang_scRNAseq Public

    single cell RNA seq scripts for Li Fang Jack's fluidigm data

    stewart-lab/LiFang_scRNAseq’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 18, 2024
  • cmdlogtime Public Forked from jinhangjiang/Your-First-Python-Package-on-PyPI

    Packaging of wrapper with logging, timing, and parameter histories

    stewart-lab/cmdlogtime’s past year of commit activity
    Python 0 MIT 34 0 0 Updated Jan 16, 2024
  • GOSeqPy Public Forked from mbernste/GOSeqPy

    A Python wrapper around GOSeq

    stewart-lab/GOSeqPy’s past year of commit activity
    Python 0 1 0 0 Updated Dec 19, 2023
  • kinderminer_kg Public

    Build a knowledge graph from PubMed abstracts using KinderMiner, Prodigy, and spaCy

    stewart-lab/kinderminer_kg’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Jul 28, 2023
  • rms_pkgs Public
    stewart-lab/rms_pkgs’s past year of commit activity
    Jupyter Notebook 1 0 3 0 Updated Jun 27, 2023
  • GSVApy Public Forked from mbernste/GSVApy

    A Python wrapper around the GSVA algorithm

    stewart-lab/GSVApy’s past year of commit activity
    Python 0 2 0 0 Updated Jun 27, 2023
  • Johansson_2023_CRTAC1_manuscript_Rmd Public

    Statistical analysis of CRTAC1 concentrations in various patient groups

    stewart-lab/Johansson_2023_CRTAC1_manuscript_Rmd’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 11, 2023
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