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chore: move raw data around to split up functionality/usecase of it
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| variable_name,data_type,format,formula,dist,expected_values_from,expected_values_to,explanation_of_values,comments | ||
| analysiscode,string,8 digit NPU code,,,"""NPU00001""","""NPU99999""",NPU27300 is HbA1c in modern units (IFCC),NPU03835 is HbA1c in old units | ||
| apk,integer,standard,,,1,10,NA,NA | ||
| atc,string,7 digits,,,[:alpha:][:digit:][:digit:][:alpha:][:alpha:]..,[:alpha:][:digit:][:digit:][:alpha:][:alpha:]..,"""^A10"" is glucose-lowering medications",NA | ||
| barnmak,integer,Binary 1 digit,,,0,1,0 is no,NA | ||
| c_diag,string,icd8 or icd10,,,"""00009""","""^[:alpha:][:alpha:][:digit:][:digit:]""","""^249|^250|^DE1[0-4]"" are diabetes codes",NA | ||
| c_diagtype,string,"1 digit (A, B, H, +)",,,"""A""","""B""","A is a primary diagnosis, B is a secondary diagnosis",NA | ||
| c_pattype,integer,standard,,,0,3,NA,has no lpr3 equivalent | ||
| c_spec,string,2 digits zero-padded,,,"""00""","""99""",NA,c_blok is derived from c_spec | ||
| cpr,string,12 digits zero-padded,,,"""00000000001""","""9999999999""",NA,lpr3 equivalent to pnr | ||
| d_inddto,date_year,YYYYMMDD,,,"as.Date(""1977-01-01"")","as.Date(""2019-01-01"")",NA,NA | ||
| dato_start,date_year,YYYYMMDD,,,"as.Date(""1977-01-01"")","as.Date(""2019-01-01"")",NA,lpr3_equivalent_to_inddto | ||
| diagnosekode,string,icd10,,,"""^[:alpha:][:alpha:][:digit:][:digit:]""","""^[:alpha:][:alpha:][:digit:][:digit:]""","""^DE1[0-4]"" are diabetes codes",NA | ||
| diagnosetype,string,"1 digit (A, B, H, +)",,,"""A""","""B""","A is a primary diagnosis, B is a secondary diagnosis",NA | ||
| dw_ek_kontakt,string,18 digits zero-padded,,,"""00000000000000001""","""9999999999999999""",NA,lpr3 equivalent to recnum | ||
| eksd,date_year,YYYYMMDD,,,"as.Date(""1995-01-01"")","as.Date(""2020-01-01"")",NA,NA | ||
| foed_dato,date_year,YYYYMMDD,,,"as.Date(""1900-01-01"")","as.Date(""2020-01-01"")",NA,NA | ||
| honuge,string,"4 digits: WWyy (2 digits week number, 2 digits year)",,,"""0105""","""5222""",see Signes code for date formatting,NA | ||
| hovedspeciale_ans,string,natural language,,,"""endokrinologi""","""intern medicin""",Is the LPR3 equivalent to c_spec but with different format,need to copy lpr2-lpr3 conversion table from dst | ||
| indo,string,blank or 7 digits zero-padded,,,"""0000001""","""9999999""",refer to the KAT classification,"the only used values are c(""0000092"", ""0000276"", ""0000781"")" | ||
| koen,integer,Binary 1 digit,,,0,1,0 is woman,NA | ||
| name,string,natural language,,,"""Metformin Actavis""","""Insulatard FlexPen""",NA,NA | ||
| patient_cpr,string,12 digits zero-padded,,,"""00000000001""","""9999999999""",NA,NA | ||
| pnr,string,12 digits zero-padded,,,"""00000000001""","""9999999999""",NA,NA | ||
| recnum,string,18 digits zero-padded,,,"""00000000000000001""","""9999999999999999""",NA,NA | ||
| samplingdate,date_year,YYYYMMDD,,,"as.Date(""2011-01-01"")","as.Date(""2022-01-01"")",NA,NA | ||
| senere_afkraeftet,string,Binary natural language,,,"""Ja""","""Nej""",NA,NA | ||
| speciale,string,5 digits,,,"""00000""","""99999""","""^54"" is diabetes-specific podiatrist service",NA | ||
| value,double,standard,,,0,180,NA,NA | ||
| vnr,string,6 digits zero-padded,,,"""000001""","""999999""",NA,NA | ||
| volume,double,standard,,,1,10,NA,NA |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,40 +1,40 @@ | ||
| register_name,register_abbrev,start_year,end_year,variable_name,danish_description,english_description,data_type,format,expected_values_from,expected_values_to,explanation_of_values,comments | ||
| CPR-registerets befolkningstabel,bef,1968,NA,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""0000000001""","""9999999999""",NA,NA | ||
| CPR-registerets befolkningstabel,bef,1968,NA,koen,koen,sex,integer,Binary 1 digit,0,1,0 is woman,NA | ||
| CPR-registerets befolkningstabel,bef,1968,NA,foed_dato,foedselsdato,date of birth,date_year,YYYYMMDD,"as.Date(""1900-01-01"")","as.Date(""2020-01-01"")",NA,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""00000000001""","""9999999999""",NA,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,eksd,ekspeditionsdato,date of purchase,date_year,YYYYMMDD,"as.Date(""1995-01-01"")","as.Date(""2020-01-01"")",NA,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,atc,ATC-kode (fuldt specificeret),ATC code (fully specified),string,7 digits,[:alpha:][:digit:][:digit:][:alpha:][:alpha:]..,[:alpha:][:digit:][:digit:][:alpha:][:alpha:]..,"""^A10"" is glucose-lowering medications",NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,volume,antal standarddoser (DDD) i pakken,number of daily standard doses (DDD) in package,double,standard,1,10,NA,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,apk,antal pakker koebt,number of packages purchased,integer,standard,1,10,NA,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,indo,indikationskode for recept,indication code,string,blank or 7 digits zero-padded,"""0000001""","""9999999""",refer to the KAT classification,"the only used values are c(""0000092"", ""0000276"", ""0000781"")" | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,name,praeparatnavn,drug retail name,string,natural language,"""Metformin Actavis""","""Insulatard FlexPen""",NA,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,vnr,varenummer,item code,string,6 digits zero-padded,"""000001""","""999999""",NA,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""00000000001""","""9999999999""",NA,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,recnum,kontakt id-nummer,record id number,string,18 digits zero-padded,"""00000000000000001""","""9999999999999999""",NA,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,d_inddto,indlaeggelsesdato (start paa kontakt),date of admission or initial contact,date_year,YYYYMMDD,"as.Date(""1977-01-01"")","as.Date(""2019-01-01"")",NA,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,c_spec,afdelings specialekode,specialty code of department,string,2 digits zero-padded,"""00""","""99""",NA,c_blok is derived from c_spec | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,c_pattype,kontakt type,contact type,integer,standard,0,3,NA,has no lpr3 equivalent | ||
| Landspatientregisterets diagnosetabel (LPR2),lpr_diag,1977,2018,recnum,kontakt_id_nummer,record id number,string,18 digits zero-padded,"""00000000000000001""","""9999999999999999""",NA,NA | ||
| Landspatientregisterets diagnosetabel (LPR2),lpr_diag,1977,2018,c_diag,diagnosekode,diagnosis code,string,icd8 or icd10,"""00009""","""^[:alpha:][:alpha:][:digit:][:digit:]""","""^249|^250|^DE1[0-4]"" are diabetes codes",NA | ||
| Landspatientregisterets diagnosetabel (LPR2),lpr_diag,1977,2018,c_diagtype,diagnosetype,diagnosis type,string,"1 digit (A, B, H, +)","""A""","""B""","A is a primary diagnosis, B is a secondary diagnosis",NA | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,cpr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""00000000001""","""9999999999""",NA,lpr3 equivalent to pnr | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,dw_ek_kontakt,kontakt id-nummer,record id number,string,18 digits zero-padded,"""00000000000000001""","""9999999999999999""",NA,lpr3 equivalent to recnum | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,dato_start,indlaeggelsesdato (start paa kontakt),date of admission or initial contact,date_year,YYYYMMDD,"as.Date(""1977-01-01"")","as.Date(""2019-01-01"")",NA,lpr3_equivalent_to_inddto | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,hovedspeciale_ans,afdelings speciale,specialty of department,string,natural language,"""endokrinologi""","""intern medicin""",Is the LPR3 equivalent to c_spec but with different format,need to copy lpr2-lpr3 conversion table from dst | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,dw_ek_kontakt,kontakt id-nummer,record id number,string,18 digits zero-padded,"""00000000000000001""","""9999999999999999""",NA,NA | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,diagnosekode,diagnosekode,diagnosis code,string,icd10,"""^[:alpha:][:alpha:][:digit:][:digit:]""","""^[:alpha:][:alpha:][:digit:][:digit:]""","""^DE1[0-4]"" are diabetes codes",NA | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,diagnosetype,diagnosetype,diagnosis type,string,"1 digit (A, B, H, +)","""A""","""B""","A is a primary diagnosis, B is a secondary diagnosis",NA | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,senere_afkraeftet,blev diagnosen senere afkraeftet?,was the diagnosis retracted later?,string,Binary natural language,"""Ja""","""Nej""",NA,NA | ||
| Sygesikringsregisteret,sysi,1990,2005,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""00000000001""","""9999999999""",NA,NA | ||
| Sygesikringsregisteret,sysi,1990,2005,barnmak,blev ydelse ydet til patientens barn?,was the service provided to the patient's child?,integer,Binary 1 digit,0,1,0 is no,NA | ||
| Sygesikringsregisteret,sysi,1990,2005,speciale,ydelsens honoreringskode,billing code of the service (fully specified),string,5 digits,"""00000""","""99999""","""^54"" is diabetes-specific podiatrist service",NA | ||
| Sygesikringsregisteret,sysi,1990,2005,honuge,uge og aar for ydelse,week and year of service,string,"4 digits: WWyy (2 digits week number, 2 digits year)","""0190""","""5205""",see Signes code for date formatting,NA | ||
| Sygesikringsregisteret,sssy,2005,NA,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""00000000001""","""9999999999""",NA,NA | ||
| Sygesikringsregisteret,sssy,2005,NA,barnmak,blev ydelse ydet til patientens barn?,was the service provided to the patient's child?,integer,Binary 1 digit,0,1,0 is no,NA | ||
| Sygesikringsregisteret,sssy,2005,NA,speciale,ydelsens honoreringskode (fuldt specificeret),billing code of the service (fully specified),string,5 digits,"""00000""","""99999""","""^54"" is diabetes-specific podiatrist service",NA | ||
| Sygesikringsregisteret,sssy,2005,NA,honuge,uge og aar for ydelse,week and year of service,string,"4 digits: WWyy (2 digits week number, 2 digits year)","""0105""","""5222""",see Signes code for date formatting,NA | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,patient_cpr,pseudonymiseret cpr-nummer,pseudonymised social security number,string,12 digits zero-padded,"""00000000001""","""9999999999""",NA,NA | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,samplingdate,dato for proevetagning,date of sampling,date_year,YYYYMMDD,"as.Date(""2011-01-01"")","as.Date(""2022-01-01"")",NA,NA | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,analysiscode,analysens NPU-kode,NPU code of analysis,string,8 digit NPU code,"""NPU00001""","""NPU99999""",NPU27300 is HbA1c in modern units (IFCC),NPU03835 is HbA1c in old units | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,value,numerisk resultat af analyse,numerical result of analysis,double,standard,0,180,NA,NA | ||
| register_name,register_abbrev,start_year,end_year,variable_name,danish_description,english_description,comments | ||
| CPR-registerets befolkningstabel,bef,1968,NA,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,NA | ||
| CPR-registerets befolkningstabel,bef,1968,NA,koen,koen,sex,NA | ||
| CPR-registerets befolkningstabel,bef,1968,NA,foed_dato,foedselsdato,date of birth,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,eksd,ekspeditionsdato,date of purchase,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,atc,ATC-kode (fuldt specificeret),ATC code (fully specified),NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,volume,antal standarddoser (DDD) i pakken,number of daily standard doses (DDD) in package,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,apk,antal pakker koebt,number of packages purchased,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,indo,indikationskode for recept,indication code,"the only used values are c(""0000092"", ""0000276"", ""0000781"")" | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,name,praeparatnavn,drug retail name,NA | ||
| Laegemiddelstatistikregisteret,lmdb,1995,NA,vnr,varenummer,item code,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,recnum,kontakt id-nummer,record id number,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,d_inddto,indlaeggelsesdato (start paa kontakt),date of admission or initial contact,NA | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,c_spec,afdelings specialekode,specialty code of department,c_blok is derived from c_spec | ||
| Landspatientregisterets administrationstabel (LPR2),lpr_adm,1977,2018,c_pattype,kontakt type,contact type,has no lpr3 equivalent | ||
| Landspatientregisterets diagnosetabel (LPR2),lpr_diag,1977,2018,recnum,kontakt_id_nummer,record id number,NA | ||
| Landspatientregisterets diagnosetabel (LPR2),lpr_diag,1977,2018,c_diag,diagnosekode,diagnosis code,NA | ||
| Landspatientregisterets diagnosetabel (LPR2),lpr_diag,1977,2018,c_diagtype,diagnosetype,diagnosis type,NA | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,cpr,pseudonymiseret cpr-nummer,pseudonymised social security number,lpr3 equivalent to pnr | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,dw_ek_kontakt,kontakt id-nummer,record id number,lpr3 equivalent to recnum | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,dato_start,indlaeggelsesdato (start paa kontakt),date of admission or initial contact,lpr3_equivalent_to_inddto | ||
| Landspatientregisterets kontakttabel (LPR3),kontakter,2019,NA,hovedspeciale_ans,afdelings speciale,specialty of department,need to copy lpr2-lpr3 conversion table from dst | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,dw_ek_kontakt,kontakt id-nummer,record id number,NA | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,diagnosekode,diagnosekode,diagnosis code,NA | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,diagnosetype,diagnosetype,diagnosis type,NA | ||
| Landspatientregisterets diagnosetabel (LPR3),diagnoser,2019,NA,senere_afkraeftet,blev diagnosen senere afkraeftet?,was the diagnosis retracted later?,NA | ||
| Sygesikringsregisteret,sysi,1990,2005,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,NA | ||
| Sygesikringsregisteret,sysi,1990,2005,barnmak,blev ydelse ydet til patientens barn?,was the service provided to the patient's child?,NA | ||
| Sygesikringsregisteret,sysi,1990,2005,speciale,ydelsens honoreringskode,billing code of the service (fully specified),NA | ||
| Sygesikringsregisteret,sysi,1990,2005,honuge,uge og aar for ydelse,week and year of service,NA | ||
| Sygesikringsregisteret,sssy,2005,NA,pnr,pseudonymiseret cpr-nummer,pseudonymised social security number,NA | ||
| Sygesikringsregisteret,sssy,2005,NA,barnmak,blev ydelse ydet til patientens barn?,was the service provided to the patient's child?,NA | ||
| Sygesikringsregisteret,sssy,2005,NA,speciale,ydelsens honoreringskode (fuldt specificeret),billing code of the service (fully specified),NA | ||
| Sygesikringsregisteret,sssy,2005,NA,honuge,uge og aar for ydelse,week and year of service,NA | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,patient_cpr,pseudonymiseret cpr-nummer,pseudonymised social security number,NA | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,samplingdate,dato for proevetagning,date of sampling,NA | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,analysiscode,analysens NPU-kode,NPU code of analysis,NPU03835 is HbA1c in old units | ||
| Laboratoriedatabasens forskertabel,lab_forsker,2011,NA,value,numerisk resultat af analyse,numerical result of analysis,NA |